PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn350421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GATA

Protein Properties

Length: 377aa MW: 41959.6 Da PI: 10.0727

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn350421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.8	5.3e-17	309	343	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG++y++ +l Achn350421 309 CSHCLAQRTPQWRAGPMGPKTLCNACGVRYKSGRL 343 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Hamap	MF_00408	25.02	19	183	IPR000814	TATA-box binding protein
Gene3D	G3DSA:3.30.310.10	9.9E-36	20	96	IPR012295	Beta2-adaptin/TBP, C-terminal domain
SuperFamily	SSF55945	2.98E-27	21	96	No hit	No description
CDD	cd04516	1.47E-115	22	180	IPR033710	TATA-box binding protein, eukaryotic
Pfam	PF00352	5.4E-29	24	96	IPR000814	TATA-box binding protein
PRINTS	PR00686	1.1E-32	25	40	IPR000814	TATA-box binding protein
PRINTS	PR00686	1.1E-32	49	68	IPR000814	TATA-box binding protein
PRINTS	PR00686	1.1E-32	68	86	IPR000814	TATA-box binding protein
SuperFamily	SSF55945	1.26E-30	97	184	No hit	No description
Gene3D	G3DSA:3.30.310.10	7.9E-35	97	181	IPR012295	Beta2-adaptin/TBP, C-terminal domain
Pfam	PF00352	2.7E-32	97	179	IPR000814	TATA-box binding protein
PROSITE pattern	PS00351	0	128	177	IPR030491	TATA-box binding protein, conserved site
SMART	SM00401	6.1E-16	303	357	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.413	303	339	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.7E-14	303	340	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.71E-14	304	366	No hit	No description
CDD	cd00202	2.08E-12	308	365	No hit	No description
Pfam	PF00320	8.9E-15	309	343	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	309	334	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006352	Biological Process	DNA-templated transcription, initiation
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MADQVSEGNQ PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV 60 IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKDFKI QNIVGSCDVK FPIRLEGLAY 120 SHGAFSSYEP ELFPGLIYRM KQPKIVLLIF VSGKIVLTGA KVRDETYTAF ENIYPVLTEF 180 RKNQQCTQPC LDYEFTPKTL KSEKVQPQQS TVGGVSVHKF VVPGRARSKR RRLGGPITKS 240 KTQLSPLAQI SPDPPLLHQT YWLADSELIL PKKEEEKEAE GEKVEEEKEG RGILGMEVQV 300 GMQQQGRRCS HCLAQRTPQW RAGPMGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSCKH 360 SNSHKKVLEM RSMSNS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MADQVSEGNQ PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV  60
IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKDFKI QNIVGSCDVK FPIRLEGLAY  120
SHGAFSSYEP ELFPGLIYRM KQPKIVLLIF VSGKIVLTGA KVRDETYTAF ENIYPVLTEF  180
RKNQQCTQPC LDYEFTPKTL KSEKVQPQQS TVGGVSVHKF VVPGRARSKR RRLGGPITKS  240
KTQLSPLAQI SPDPPLLHQT YWLADSELIL PKKEEEKEAE GEKVEEEKEG RGILGMEVQV  300
GMQQQGRRCS HCLAQRTPQW RAGPMGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSCKH  360
SNSHKKVLEM RSMSNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1qn5_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn6_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn6_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn7_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn7_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn8_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn8_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn9_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn9_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qna_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qna_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnb_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnb_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnc_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnc_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qne_A	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qne_B	1e-117	1	185	1	200	TRANSCRIPTION INITIATION FACTOR TFIID-1
1vok_A	1e-117	1	185	1	200	TATA-BOX-BINDING PROTEIN
1vok_B	1e-117	1	185	1	200	TATA-BOX-BINDING PROTEIN
1vol_B	1e-117	1	185	1	200	PROTEIN (TATA BINDING PROTEIN (TBP))

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	232	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC337047	1e-107	KC337047.1 Camellia oleifera TATA-box-binding protin (TBP) mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	2e-34	GATA transcription factor 9