PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn350331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 449aa    MW: 49924.5 Da    PI: 7.7893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn350331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-171967355
         AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  GVr+++ +grWvAeI+d      k+ r +lg++ taeeAa+a+++a+  l+g
  Achn350331 19 LVGVRQRS-SGRWVAEIKDtT----KKIRMWLGTYETAEEAARAYDEAACLLRG 67
                67***999.7*********33....36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-281874No hitNo description
PROSITE profilePS5103218.9791875IPR001471AP2/ERF domain
SMARTSM003801.8E-331881IPR001471AP2/ERF domain
PRINTSPR003677.1E-61930IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-181975IPR016177DNA-binding domain
PfamPF008474.5E-121967IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-262074IPR001471AP2/ERF domain
PRINTSPR003677.1E-64157IPR001471AP2/ERF domain
SuperFamilySSF1035062.09E-23274402IPR023395Mitochondrial carrier domain
Gene3DG3DSA:1.50.40.104.3E-24275402IPR023395Mitochondrial carrier domain
PfamPF001532.6E-18283378IPR018108Mitochondrial substrate/solute carrier
PROSITE profilePS5092023.629284375IPR018108Mitochondrial substrate/solute carrier
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MPKFKGIRGR GNGNNSNKLV GVRQRSSGRW VAEIKDTTKK IRMWLGTYET AEEAARAYDE  60
AACLLRGSNT RTNFITHVTH DSPLAFRISE LLNTKKSGKK LSENIYGDTN SSYTHTPPIS  120
TTANIPSIST GSCTISTSDN ETTSSGKLQD TQLFDDAYRP NWSNCLEEFE LGTSQSGMFG  180
HRFDQFPFNQ ELLELPRNVV SHEASELEFS EFDRIKVERQ ISASFYAMNG VQEYMETVHD  240
PSRENGERES KVRRCMADRE AIRQWRDRWV LTKKAVDANG GKPLPIYQKA LCGLTAGAIG  300
ACVGNPADLA LIRMQADATL PLAQRRNYKN VFHALYRIVA DEGGLALWKG AGPTVVRAMA  360
LNMGMLASYD QSVEFFRDSL GLDETKTVIE LRIGSTSNQC GTVEVKFISV SLMGIIKQTI  420
NLSEGSRPME LTWIFLNQIE KLEATIGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13974571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281619.11e-88PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotA0A1X9PY888e-80ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A2R6QRM71e-178A0A2R6QRM7_ACTCH; Ethylene-responsive transcription factor RAP2-11 like
STRINGVIT_08s0007g07250.t015e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-24related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]