PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn350071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 180aa    MW: 20145.1 Da    PI: 10.3348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn350071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-053859223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                kC +C+ksF+++ +L  H++ H
  Achn350071 38 KCAYCSKSFPSSQSLGGHQNAH 59
                8******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.5313764IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-53864No hitNo description
PfamPF139123.1E-73861IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-43863IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQHKVDSSES STEQQPNPSL NADELLSLKH QPSFWALKCA YCSKSFPSSQ SLGGHQNAHR  60
RERSEERRLY IKNPLAYRKR ALMRSCKPLN VKPQVAKHEL SLSLGHGPRP REGPSRVGPM  120
TRYEFPYKAA NANWKAKLAL DLNLFPMREL AGDGGNIHFK VCNEVTVPAV KGLDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116637.13e-44zinc finger protein 7-like
TrEMBLA0A2R6QGW11e-113A0A2R6QGW1_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1517022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-10C2H2 family protein