PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn349461

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 410aa MW: 46906.8 Da PI: 5.8765

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn349461	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76	6.1e-24	54	125	2	74
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 W ++e ++Li +rr+++ ++++k++k+lW+++s++mr+rgf rsp++C++kw+nl k++kk k+++++++ + Achn349461 54 WAHDEMRTLIGLRRDTDALFNTSKSNKHLWDQISARMRDRGFDRSPTMCTDKWRNLLKEFKKAKQSDRGGS-G 125 *******************************************************************9973.2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.886	46	110	IPR017877	Myb-like domain
CDD	cd12203	1.23E-24	52	117	No hit	No description
Pfam	PF13837	2.2E-18	53	135	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MYLSEKPHPI DFYKAEEPED DADAENEPRN MLIEAPPPPP PRDASPPKKR AETWAHDEMR 60 TLIGLRRDTD ALFNTSKSNK HLWDQISARM RDRGFDRSPT MCTDKWRNLL KEFKKAKQSD 120 RGGSGKMWCY KEIEEILRER STSVGDYKSP VASKVDSYMH FSDKGIDDAS ITFGPIEGSC 180 FGIFLHSFEL LGHLIVHLRI AFCIHVPFYI TKLSEETKIS WCAASGTQAL NLEKRLDHDG 240 HPLAIAAAET VAANGVSPWN WRETPSNGEQ CNSYDGRVIT VKWGDYMKKI GVDGTADAIK 300 EAIKSAFRLR TKRAFWLEDE DNIVRTLDRE MPLGNYTLHH DEGLTIKVCL YEESDHIPVH 360 TEDRTFYIED DYRDFLSHRG WTCLREYNGY RNIDSMDDLC PGAIYRGVS*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MYLSEKPHPI DFYKAEEPED DADAENEPRN MLIEAPPPPP PRDASPPKKR AETWAHDEMR  60
TLIGLRRDTD ALFNTSKSNK HLWDQISARM RDRGFDRSPT MCTDKWRNLL KEFKKAKQSD  120
RGGSGKMWCY KEIEEILRER STSVGDYKSP VASKVDSYMH FSDKGIDDAS ITFGPIEGSC  180
FGIFLHSFEL LGHLIVHLRI AFCIHVPFYI TKLSEETKIS WCAASGTQAL NLEKRLDHDG  240
HPLAIAAAET VAANGVSPWN WRETPSNGEQ CNSYDGRVIT VKWGDYMKKI GVDGTADAIK  300
EAIKSAFRLR TKRAFWLEDE DNIVRTLDRE MPLGNYTLHH DEGLTIKVCL YEESDHIPVH  360
TEDRTFYIED DYRDFLSHRG WTCLREYNGY RNIDSMDDLC PGAIYRGVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-38	48	132	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016569813.1	0.0	PREDICTED: trihelix transcription factor GT-4-like isoform X1
Swissprot	Q9FX53	1e-147	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2R6QRA7	0.0	A0A2R6QRA7_ACTCH; Trihelix transcription factor GT-1 like
STRING	XP_008222025.1	1e-175	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-145	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]