PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn348771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 31714.8 Da PI: 5.6912 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 99 | 150 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++++k+L+ Achn348771 99 QRMTHIAVERNRRKQMNEYLAVIRSLMPSS---YVQRGDQASIIGGAINFVKELE 150 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.09E-12 | 97 | 154 | No hit | No description |
PROSITE profile | PS50888 | 14.627 | 98 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-16 | 98 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-10 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 99 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-8 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MALEAMEYPP DLFGYACKEL HTLSAVWGGH EQDKSLLGIL DNSSSASSHA VQNGKDYWDP 60 DSSSEAGEGS PPAEAPAGSG RRKRRRTKNS KNKEELESQR MTHIAVERNR RKQMNEYLAV 120 IRSLMPSSYV QRGDQASIIG GAINFVKELE QLLQALEAEN RTINQQPNNA LSTIFADFFT 180 FPQYSTSSPA AAEQRPAMAE IEVTIAESHA NLKILSKRRP RQLLKVVAGI QCLRLTVLHL 240 NVTTVDQMVL YSLSVKIEDG CQLTTVDEIA DAVNDLLARI ENEAALC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 85 | RKRRR |
2 | 81 | 86 | RKRRRT |
3 | 81 | 88 | RKRRRTKN |
4 | 99 | 110 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028052116.1 | 1e-136 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 7e-87 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A2R6Q0W1 | 0.0 | A0A2R6Q0W1_ACTCH; Transcription factor bHLH96 like | ||||
STRING | XP_010272971.1 | 1e-120 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1996 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-76 | bHLH family protein |
Publications ? help Back to Top | |||
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