PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 288aa    MW: 31714.8 Da    PI: 5.6912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-1299150155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Achn348771  99 QRMTHIAVERNRRKQMNEYLAVIRSLMPSS---YVQRGDQASIIGGAINFVKELE 150
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.09E-1297154No hitNo description
PROSITE profilePS5088814.62798149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1698167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-1099150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1399167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-8104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MALEAMEYPP DLFGYACKEL HTLSAVWGGH EQDKSLLGIL DNSSSASSHA VQNGKDYWDP  60
DSSSEAGEGS PPAEAPAGSG RRKRRRTKNS KNKEELESQR MTHIAVERNR RKQMNEYLAV  120
IRSLMPSSYV QRGDQASIIG GAINFVKELE QLLQALEAEN RTINQQPNNA LSTIFADFFT  180
FPQYSTSSPA AAEQRPAMAE IEVTIAESHA NLKILSKRRP RQLLKVVAGI QCLRLTVLHL  240
NVTTVDQMVL YSLSVKIEDG CQLTTVDEIA DAVNDLLARI ENEAALC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185RKRRR
28186RKRRRT
38188RKRRRTKN
499110RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052116.11e-136transcription factor bHLH96-like
SwissprotQ9C7T47e-87BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6Q0W10.0A0A2R6Q0W1_ACTCH; Transcription factor bHLH96 like
STRINGXP_010272971.11e-120(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]