PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 611aa    MW: 67473.6 Da    PI: 6.6606
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.41e-09217273155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+ ++ a++k++g
  Achn348581 217 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARSYDLAALKYWG 273
                 57*******************4444.2344336655.7799999*************98 PP
2AP249.51.1e-15316367155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Achn348581 316 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 367
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-13217283IPR016177DNA-binding domain
PfamPF008471.5E-7217273IPR001471AP2/ERF domain
CDDcd000181.95E-18217283No hitNo description
PROSITE profilePS5103217.042218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-11218282IPR001471AP2/ERF domain
SMARTSM003801.4E-20218287IPR001471AP2/ERF domain
PRINTSPR003674.7E-6219230IPR001471AP2/ERF domain
CDDcd000188.85E-12316375No hitNo description
PfamPF008475.6E-10316367IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17316376IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-18317375IPR001471AP2/ERF domain
PROSITE profilePS5103219.151317375IPR001471AP2/ERF domain
SMARTSM003801.6E-31317381IPR001471AP2/ERF domain
PRINTSPR003674.7E-6357377IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAPESSNWLS FSLSPMEMLN SSSQAQMLQS TMKNVPFDGA SGDSQQYYFL DNFYGNGWEN  60
KAQEVTAQSI ADSTIFTTFL DSQIQHPPPK LEDFLGNDSS LVRYSDSRTE TQDSSLTHLY  120
DHSGSVYFAD HHDLKTVPAT AGFQAFSGNS GSEVDDSASV ARTQLVSTES GTELGFSQCP  180
NGALSLGVSA RGSEKALVSV DSESCKKISD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC  240
RREGQARKGR QGGYDKEDKA ARSYDLAALK YWGPTATTNF PVSSYTTEIE EMKHVTKQEF  300
IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT EEEAAEAYDI  360
AAIKFRGVNA VTNFEMNRYD VEAIMKSSLP IGGAAKRLKL SLEAEQKPSL NHDQQPPQCT  420
TSSSINFSTI IHPLAAVPCG IPFDTTARYH HNLFHLNTDG ASDPPGSAAA TPQSKAAIGV  480
GSRYGEKDMD NMSQKFRNEE LPETWCSQFF EKYKATKPYR LLLGSNLGDL AELVKDSTRN  540
SGQQTPQQLQ VMQSQIQSQQ QAAIRQPQQE HRNMSTVRAQ PVKVEDFQEL GGDASLKHDS  600
EENKLTSPPK *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123293.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2R6S3030.0A0A2R6S303_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGEOX919250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]