PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 233aa    MW: 24986.5 Da    PI: 8.752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-125297454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 h+e+ErrRR+riN  +++Lr+llP+a      K +Ka+ L ++v+ +++L
  Achn348451 52 IHSEAERRRRKRINGHLATLRTLLPHA-----VKTDKASLLAEVVQRLRDL 97
                59************************9.....7************999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8434897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1252109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-105397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1153100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-115399No hitNo description
SMARTSM003531.5E-1054103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.2E-6142209No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-7143195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MYSIPSYHEL GSSSNSVNFL QGVLSSSTNN QNSSITSSRS TPEEKAAAAS KIHSEAERRR  60
RKRINGHLAT LRTLLPHAVK TDKASLLAEV VQRLRDLKKT IAELADIGGD SESCLYHMLP  120
SETDELKLCH VEGDPQGALI KATLCCDDRP ELISEVTRAV RSVAGTVVRA EMATVGGRIK  180
SVLWIQVKSS GGGEGLGMLR RALKVVVEDS AALWSGPGLG LPENKRACLS HF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074383.14e-79transcription factor bHLH30-like
TrEMBLA0A2R6S3211e-168A0A2R6S321_ACTCH; Transcription factor bHLH30 like
STRINGXP_009605433.11e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-37bHLH family protein