PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn347521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 722aa    MW: 79146.1 Da    PI: 6.2816
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn347521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08303323526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G+C++Gd C +aHg
  Achn347521 303 PCPNFRK-GQCRRGDLCEYAHG 323
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024837003564IPR002110Ankyrin repeat
CDDcd002043.58E-1536162No hitNo description
PfamPF127961.7E-1042145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1580160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.74181188IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1681161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002681111IPR002110Ankyrin repeat
SMARTSM002480.0054116148IPR002110Ankyrin repeat
PROSITE profilePS5008811.594116151IPR002110Ankyrin repeat
SMARTSM003569.5E-6298324IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-6303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422303325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4303325IPR000571Zinc finger, CCCH-type
SMARTSM0035648333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MCSGPDQLNS ETLVPLSLPD SVKLTRDMNN LAEISFSSLL ELAADNNVEG FKHLIFRIAS  60
AINDMGLWYG RQRASSQMVL EHRTPLMVAA TYGSVDIVKL ILSLSEADVN LSCGPDKSTA  120
LHCAASSGSV NAVNVVKLLL LAGADRDSMN ANGHHPIDVV VAPPKFPDLK DALEVILRDD  180
DSIHLENLKI SYGSEKSVSP PLSSSPQNGP MSSAVDSTSA LNHFRLGDIP TSCAPEKKEY  240
PVDPSFPDIK NSVYSTDEFR MFSFKIRPCS RAYTHDWTEC PFVHPGENAR RRDPRKFHYS  300
CVPCPNFRKG QCRRGDLCEY AHGVFECWLH PAQYRPRLCK DGTSCSRRVC FFAHTPEELR  360
PLYMSTGSAV PSPRSLTSAA SVMDMAVALS LLPGSPSPVG GMSPSPFTPP MSPSGNAIMH  420
PSVAWPQQNI PALHLPGSNL QTSRLRSSFN ARDIPTEELN MLLDFEVQQQ QFLNDISCFS  480
QTHPNTSSTN LPVRSKTLTP SNLDNIFSTE VSSPRFTDQN VASPMFSPSH KPVVLNQFQQ  540
PQNILSPINT NLYSPNNVDH PFMQAPYHVP SPGRISPRGI ELQSPFSPRL SSLAHCENQQ  600
TQLRSLSSRD LGTNLPRNLG SNGAGIVGSP VNSLAKWEYP NGAVDWSVNE DELARVRKSF  660
TSGHNGEEPD LSWVQSLVKE SPPEIKETPP NEDSDSNSTE KLDHAVLGAW LEQMQLDKVV  720
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068109.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028068110.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2R6QTU70.0A0A2R6QTU7_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]