PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn346781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 279aa    MW: 30514.5 Da    PI: 6.7967
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn346781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.92.6e-31137193158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy +Il+RRq+Rak+e ekkl +++ kpylheSRh+hA+rR+RgsgGrF
  Achn346781 137 QEPVYVNAKQYIGILRRRQSRAKAELEKKL-ITALKPYLHESRHQHAMRRARGSGGRF 193
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-34135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.219136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-27138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-22139161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-22170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGYNSIPTTE IGGNTSNSSF LEQSKDCQSQ SDDGMDEDDD YAIKESQITA SPHSDGNYGQ  60
DNQNFQHQTS VIPHTSNENL TQPPHVELVG RSIACTSNPY QDPYYGGMMA GYGPQPLVPH  120
LLDVHYASLP LALEMAQEPV YVNAKQYIGI LRRRQSRAKA ELEKKLITAL KPYLHESRHQ  180
HAMRRARGSG GRFAKKSNTL KCTTKETGTA SVSTSSSGSE PLHNEATEIR NSLQEAKGPE  240
VHKTFELRGY TDRSGGDSSD HQWGSVSSNK ASQRALAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-17137193258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114277.11e-134nuclear transcription factor Y subunit A-1-like
RefseqXP_028114278.11e-134nuclear transcription factor Y subunit A-1-like
SwissprotQ945M91e-61NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2R6PFN51e-107A0A2R6PFN5_ACTCH; Nuclear transcription factor Y subunit A-1 like
STRINGXP_006470619.11e-95(Citrus sinensis)
STRINGXP_006446125.11e-95(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-53nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]