PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn346781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YA | ||||||||
Protein Properties | Length: 279aa MW: 30514.5 Da PI: 6.7967 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.9 | 2.6e-31 | 137 | 193 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy +Il+RRq+Rak+e ekkl +++ kpylheSRh+hA+rR+RgsgGrF Achn346781 137 QEPVYVNAKQYIGILRRRQSRAKAELEKKL-ITALKPYLHESRHQHAMRRARGSGGRF 193 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-34 | 135 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.219 | 136 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.7E-27 | 138 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-22 | 139 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 141 | 161 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-22 | 170 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGYNSIPTTE IGGNTSNSSF LEQSKDCQSQ SDDGMDEDDD YAIKESQITA SPHSDGNYGQ 60 DNQNFQHQTS VIPHTSNENL TQPPHVELVG RSIACTSNPY QDPYYGGMMA GYGPQPLVPH 120 LLDVHYASLP LALEMAQEPV YVNAKQYIGI LRRRQSRAKA ELEKKLITAL KPYLHESRHQ 180 HAMRRARGSG GRFAKKSNTL KCTTKETGTA SVSTSSSGSE PLHNEATEIR NSLQEAKGPE 240 VHKTFELRGY TDRSGGDSSD HQWGSVSSNK ASQRALAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-17 | 137 | 193 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028114277.1 | 1e-134 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_028114278.1 | 1e-134 | nuclear transcription factor Y subunit A-1-like | ||||
Swissprot | Q945M9 | 1e-61 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A2R6PFN5 | 1e-107 | A0A2R6PFN5_ACTCH; Nuclear transcription factor Y subunit A-1 like | ||||
STRING | XP_006470619.1 | 1e-95 | (Citrus sinensis) | ||||
STRING | XP_006446125.1 | 1e-95 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 3e-53 | nuclear factor Y, subunit A9 |
Publications ? help Back to Top | |||
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