PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn346681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 748aa    MW: 86199.9 Da    PI: 7.676
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn346681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.71.5e-2628114191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 +fY+eYAk vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +gkw+++++ +eHnHel p
  Achn346681  28 EFYKEYAKAVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGKWYIHSFIKEHNHELLP 114
                 6****************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2428114IPR004330FAR1 DNA binding domain
PfamPF105513.1E-27227320IPR018289MULE transposase domain
PROSITE profilePS5096610.324507543IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-8513541IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-8518545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MNSIVIAGNT NLEPRDDMEF ESNEVAYEFY KEYAKAVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRPNGKWY IHSFIKEHNH ELLPAQAHFF  120
RSHRNVDPLK NDAKVRRRMI LAAVSKQYGA YQYTGSLESY IRNQHDKGRN LILEDGDAQM  180
LLELFVHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGMDD YTNFGDVVSF DTTYFMNKYK  240
IPLVLFVGLN HHIQPTLLGC ALIADETVYT FVWLLQTWCL SMGGRAPRVI LTDQNNALKA  300
AIAAVLPETR HCFSLWHVVE KIPRQLDYRS LWHDTFMAKF NKCIHRSWTE EQFEKRWWKL  360
LDRFNLRDDE WTQSLYEDRK LWVPTFMRDI SFAGLSTASR SESLSSFFDK YVHGETCLTD  420
FLGKYKVILE DRYEEEAKAN FDAWHETPEL KSPSPFEKQM SMIYTREIFK KFQVEVLGAA  480
ACHLNKEKED EIAITYAVKD FEDNQDFMVE WSESKSEICC SCRLFEYNGY LCRHAIVVLQ  540
MSGVFSIPFK YILQRWTNAA TSRRAICLDE IQSKVRRYND LCRRAIILGE EGSLSQESYN  600
VALGAIKEAL KQCASVNNSA ENDSRPSTLP TLAICGSELE NQGCATTSKE QANLKMSNSN  660
KASKRVESGK ENDANKRRKV PLELEAVNVG TQGSFHEMVL STSRPTQLLD RVPANFPNVV  720
PTIFTNMTPT QFHNVASTHV HDSRLPR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062115.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2R6QTS70.0A0A2R6QTS7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_09s0054g01830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]