PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn346681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 748aa MW: 86199.9 Da PI: 7.676 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.7 | 1.5e-26 | 28 | 114 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +gkw+++++ +eHnHel p Achn346681 28 EFYKEYAKAVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGKWYIHSFIKEHNHELLP 114 6****************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-24 | 28 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.1E-27 | 227 | 320 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.324 | 507 | 543 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-8 | 513 | 541 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-8 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MNSIVIAGNT NLEPRDDMEF ESNEVAYEFY KEYAKAVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRPNGKWY IHSFIKEHNH ELLPAQAHFF 120 RSHRNVDPLK NDAKVRRRMI LAAVSKQYGA YQYTGSLESY IRNQHDKGRN LILEDGDAQM 180 LLELFVHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGMDD YTNFGDVVSF DTTYFMNKYK 240 IPLVLFVGLN HHIQPTLLGC ALIADETVYT FVWLLQTWCL SMGGRAPRVI LTDQNNALKA 300 AIAAVLPETR HCFSLWHVVE KIPRQLDYRS LWHDTFMAKF NKCIHRSWTE EQFEKRWWKL 360 LDRFNLRDDE WTQSLYEDRK LWVPTFMRDI SFAGLSTASR SESLSSFFDK YVHGETCLTD 420 FLGKYKVILE DRYEEEAKAN FDAWHETPEL KSPSPFEKQM SMIYTREIFK KFQVEVLGAA 480 ACHLNKEKED EIAITYAVKD FEDNQDFMVE WSESKSEICC SCRLFEYNGY LCRHAIVVLQ 540 MSGVFSIPFK YILQRWTNAA TSRRAICLDE IQSKVRRYND LCRRAIILGE EGSLSQESYN 600 VALGAIKEAL KQCASVNNSA ENDSRPSTLP TLAICGSELE NQGCATTSKE QANLKMSNSN 660 KASKRVESGK ENDANKRRKV PLELEAVNVG TQGSFHEMVL STSRPTQLLD RVPANFPNVV 720 PTIFTNMTPT QFHNVASTHV HDSRLPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028062115.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A2R6QTS7 | 0.0 | A0A2R6QTS7_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | VIT_09s0054g01830.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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