PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn346471

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 278aa MW: 31045 Da PI: 6.6865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn346471	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Achn346471 155 THSLAERVRRGKINERLKCLQGIVPGC----YKTMGMAVMLDEIINYVQSLQ 202 8***********************9....35599999*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-15	149	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.48E-9	149	206	No hit	No description
PROSITE profile	PS50888	14.64	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-15	155	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-5	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-7	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MESPKPSFSS LDFPPNMELM KQFAFLNQSP MENQNFINFQ SLMGFSIDNF LIQQTPEFPG 60 NFAENFPGIF HHDDKNVLPV SKPNSSGGNE IHGIKKRKEM DFPESSSGNS SPPVSEDGIR 120 QKNEGGKRMR GNEERDEILK EVVHVRARRG QATGTHSLAE RVRRGKINER LKCLQGIVPG 180 CYKTMGMAVM LDEIINYVQS LQNQVEFLSM KLTAASRFYD FNSDIDAVEA MQRANTYEAQ 240 KVQRIVTEGN KVLASSSSLL GSSDLTFGSY PSLPYNT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027169004.1	1e-104	transcription factor BEE 3
Swissprot	Q8GWK7	1e-57	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A2R6P449	0.0	A0A2R6P449_ACTCH; Transcription factor BEE like
STRING	XP_007154151.1	1e-101	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-57	BR enhanced expression 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]