PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn346301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 430aa    MW: 47453.6 Da    PI: 6.9605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn346301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12254299454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Achn346301 254 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIHEL 299
                 899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4327181IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.14E-17249314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.945250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-14253304No hitNo description
PfamPF000103.2E-10254299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16254313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDKLIISPSS SSSLVSPLSS HGSPPSLQQK LRFILRSQPD WWTYAIFWGS SKQDDSGRHL  60
LSWEDGHFQG AKNIAPKPHH TAAESDADVT DAAEWFYVMS LTRSFSTGDG IPGKAFRSGS  120
FVWLCGSNQL QFYNCERVKE AQFHGILTLV CVPTSIGVLE LGSCDVIKEN WYLVQQAKSL  180
FGSDSDVTMP QIPKQPNPSH TISFADFGLV AGLQEAAATN IYVESEHSKL ENQQSKTPKK  240
RGRKPGVGRE MAVNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYIHELT  300
SKVELLESQV HERECNKKVK VELGDATDNH STTTSVDQTR PNNNSFGVIQ PPEVEVKIVG  360
PDAMIRVQSE NGNYPAARLM DALRDLGLLV HHASMSSVHD LMLQDVVIRA PGELTSEDGL  420
KAALLKRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-27231815192Transcription factor MYC3
4rqw_B4e-27231815192Transcription factor MYC3
4rs9_A4e-27231815192Transcription factor MYC3
4yz6_A4e-27231815192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122222.11e-177transcription factor MYC2-like
TrEMBLA0A2R6RCE90.0A0A2R6RCE9_ACTCH; Transcription factor bHLH14 like
STRINGPOPTR_0002s17750.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-85bHLH family protein