PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn346301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 47453.6 Da PI: 6.9605 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.6e-12 | 254 | 299 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Achn346301 254 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIHEL 299 899***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-43 | 27 | 181 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.14E-17 | 249 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.945 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-14 | 253 | 304 | No hit | No description |
Pfam | PF00010 | 3.2E-10 | 254 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 254 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-15 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MDKLIISPSS SSSLVSPLSS HGSPPSLQQK LRFILRSQPD WWTYAIFWGS SKQDDSGRHL 60 LSWEDGHFQG AKNIAPKPHH TAAESDADVT DAAEWFYVMS LTRSFSTGDG IPGKAFRSGS 120 FVWLCGSNQL QFYNCERVKE AQFHGILTLV CVPTSIGVLE LGSCDVIKEN WYLVQQAKSL 180 FGSDSDVTMP QIPKQPNPSH TISFADFGLV AGLQEAAATN IYVESEHSKL ENQQSKTPKK 240 RGRKPGVGRE MAVNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYIHELT 300 SKVELLESQV HERECNKKVK VELGDATDNH STTTSVDQTR PNNNSFGVIQ PPEVEVKIVG 360 PDAMIRVQSE NGNYPAARLM DALRDLGLLV HHASMSSVHD LMLQDVVIRA PGELTSEDGL 420 KAALLKRLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-27 | 23 | 181 | 5 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-27 | 23 | 181 | 5 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-27 | 23 | 181 | 5 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-27 | 23 | 181 | 5 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122222.1 | 1e-177 | transcription factor MYC2-like | ||||
TrEMBL | A0A2R6RCE9 | 0.0 | A0A2R6RCE9_ACTCH; Transcription factor bHLH14 like | ||||
STRING | POPTR_0002s17750.1 | 1e-172 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 8e-85 | bHLH family protein |