PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn345561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 271aa MW: 31013.3 Da PI: 4.7573

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn345561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.3	4.5e-32	4	102	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 Ca+C+++rr+C+++Cv+a +fp +++++f+ v+++FG+sn +k+lk+l+ +++++++++l++eAea+ +dP+ G +g++ +l++q+ lk+e+++lkee Achn345561 4 CASCAHQRRTCPEGCVMALHFPRTRTQEFQLVNRVFGVSNAIKILKDLNFSQQKETVEALIWEAEAWEQDPICGPLGLYERLEEQILMLKEEIQMLKEE 102 **********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.884	2	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-29	4	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MANCASCAHQ RRTCPEGCVM ALHFPRTRTQ EFQLVNRVFG VSNAIKILKD LNFSQQKETV 60 EALIWEAEAW EQDPICGPLG LYERLEEQIL MLKEEIQMLK EEIQMPGEQN PVIQERGFDL 120 ERDNGHIYVQ QQNVANPSFV QDLERERNHG VQGFHHQEQE RGNNSGRQTI LQQEEVDRES 180 SGGGGIRTFQ HHSVQELERE SDERERASES YQGPERGTHR NNNIPGSSVC EFNVMSFNFQ 240 IIDGLHGYVQ DADVARTGCV QDSQNPIFFR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	2	103	10	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	2	103	10	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6PYJ5	1e-115	A0A2R6PYJ5_ACTCH; LOB domain-containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	3e-22	LOB domain-containing protein 10