PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn345551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 213aa MW: 23791.3 Da PI: 7.3264 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.5 | 1.9e-17 | 133 | 211 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 + n+YA ++GF + s+ ++s+ +g++t+r+f C k+ + +e ++++ ++gCka+++v+k+k +gkw vtkle eH+H++ Achn345551 133 YHNAYAIRAGFVIGASNCYRSSLDGSVTSRKFLCDKHERLRE----------NNETREIGCKAMIMVRKDKkSGKWLVTKLEREHSHPV 211 679*******************************98654444..........566689***********999***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-15 | 133 | 211 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDLVLILVSL ICVHTSVKAS TFKDSRAEVS MKKLFSLCKR PGVLPGDHPE VAKVDLVPNE 60 HDHDGGICVV PELLQPPRDV LGRDMPVNFS TNADIDNKVF EGTGDMIHLY DNERDLILHK 120 TDGHVEPYIG MVYHNAYAIR AGFVIGASNC YRSSLDGSVT SRKFLCDKHE RLRENNETRE 180 IGCKAMIMVR KDKKSGKWLV TKLEREHSHP VG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028119173.1 | 2e-36 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Refseq | XP_028119174.1 | 2e-36 | protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
Refseq | XP_028119175.1 | 2e-36 | protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
TrEMBL | A0A2R6QJP0 | 5e-39 | A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-18 | FAR1 family protein |