PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn340691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | DBB | ||||||||
Protein Properties | Length: 213aa MW: 23222.4 Da PI: 6.0795 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.3 | 2.8e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++fC ++ lC+ C ++ H Achn340691 4 LCDVCESASAIIFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 25.9 | 2e-08 | 54 | 91 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H Achn340691 54 PRCDICENAPAFFYCEIDGSSLCLQCDMIAHVGgkrtH 91 79**************************9996544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.082 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.0E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.90E-6 | 3 | 45 | No hit | No description |
SMART | SM00336 | 3.1E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-6 | 54 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.77E-6 | 54 | 84 | No hit | No description |
PROSITE profile | PS50119 | 8.546 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MRTLCDVCES ASAIIFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SIVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIAHVGGKRT HGRYLVLRQR VEFPGDKPGH VGGIGLEPGE 120 MDEIIREHKQ PPKPRMGEIQ QNHRLSAVSV LDANIDGGGN MNNKMIDLNA NPQRVYGQTS 180 NNQEHGMDVL SGDNQESASV VPVASFKREF DK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028105100.1 | 1e-120 | B-box zinc finger protein 18 | ||||
Refseq | XP_028105163.1 | 1e-120 | B-box zinc finger protein 18 | ||||
Swissprot | C0SVM5 | 2e-83 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2R6RBW0 | 1e-156 | A0A2R6RBW0_ACTCH; B-box zinc finger protein | ||||
STRING | EOX97858 | 1e-113 | (Theobroma cacao) | ||||
STRING | cassava4.1_016111m | 1e-113 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-85 | DBB family protein |