PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn340021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HSF | ||||||||
Protein Properties | Length: 330aa MW: 37609.7 Da PI: 4.609 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 69 | 1e-21 | 14 | 99 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k +e+++d+ ++ lisws+ng+sfv++d +ef++++LpkyFkh+nfaSF gF+k++ ++ eF++++F kg+++ll++i Achn340021 14 FLLKCHEMVDDQFTDALISWSSNGDSFVISDVTEFESELLPKYFKHNNFASF-------GFRKIDPDR---------HEFANDQFIKGQNHLLKNIF 94 99*************************************************9.......9******99.........57****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Achn340021 95 RRKQS 99 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.6E-34 | 10 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.9E-23 | 11 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.94E-23 | 11 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.6E-18 | 14 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-10 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-10 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MVKSIENGVL IAPFLLKCHE MVDDQFTDAL ISWSSNGDSF VISDVTEFES ELLPKYFKHN 60 NFASFGFRKI DPDRHEFAND QFIKGQNHLL KNIFRRKQSQ VMVQQKSSQK KDKGVGQIEE 120 DKNSELWKEV ESLKTDKNVL MQELVKLRQH QQTSQSKMVV LREQLKGMEK NQQQMLSFIV 180 MAMQSPGFLV QLLQPKENNW RMAEAGKSVL KGVVPSDGMI VRYQPPMHQS PEPLSTPTLD 240 SEESLELDLS SEELKDLFMN IDFTPGPMDE KLLSPGSHWP MVIPELPEDY SILEQLLLSP 300 LSENKEDGEY DTAENTDSGM EIELPSRGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-17 | 11 | 99 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 6e-17 | 11 | 96 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-17 | 11 | 96 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-17 | 11 | 96 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028078808.1 | 1e-162 | heat stress transcription factor A-8 | ||||
TrEMBL | A0A2R6PHB5 | 0.0 | A0A2R6PHB5_ACTCH; Heat stress transcription factor A-8 like | ||||
STRING | XP_009770996.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12235 | 22 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 9e-72 | heat shock transcription factor A8 |