PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn340021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 330aa    MW: 37609.7 Da    PI: 4.609
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn340021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind691e-2114992103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k +e+++d+ ++ lisws+ng+sfv++d +ef++++LpkyFkh+nfaSF       gF+k++ ++          eF++++F kg+++ll++i 
    Achn340021  14 FLLKCHEMVDDQFTDALISWSSNGDSFVISDVTEFESELLPKYFKHNNFASF-------GFRKIDPDR---------HEFANDQFIKGQNHLLKNIF 94 
                   99*************************************************9.......9******99.........57****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn340021  95 RRKQS 99 
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-341096IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-231191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-231196IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-181496IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-101437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-105264IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVKSIENGVL IAPFLLKCHE MVDDQFTDAL ISWSSNGDSF VISDVTEFES ELLPKYFKHN  60
NFASFGFRKI DPDRHEFAND QFIKGQNHLL KNIFRRKQSQ VMVQQKSSQK KDKGVGQIEE  120
DKNSELWKEV ESLKTDKNVL MQELVKLRQH QQTSQSKMVV LREQLKGMEK NQQQMLSFIV  180
MAMQSPGFLV QLLQPKENNW RMAEAGKSVL KGVVPSDGMI VRYQPPMHQS PEPLSTPTLD  240
SEESLELDLS SEELKDLFMN IDFTPGPMDE KLLSPGSHWP MVIPELPEDY SILEQLLLSP  300
LSENKEDGEY DTAENTDSGM EIELPSRGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-17119917123Heat shock factor protein 1
5d5u_B6e-17119626129Heat shock factor protein 1
5d5v_B6e-17119626129Heat shock factor protein 1
5d5v_D6e-17119626129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078808.11e-162heat stress transcription factor A-8
TrEMBLA0A2R6PHB50.0A0A2R6PHB5_ACTCH; Heat stress transcription factor A-8 like
STRINGXP_009770996.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.19e-72heat shock transcription factor A8