PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn336631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 23962.4 Da PI: 4.3198 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5.1e-06 | 106 | 126 | 35 | 55 |
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 + K +Ka++L +A+eY+k+Lq Achn336631 106 DCKTDKASMLDEAIEYLKQLQ 126 6799****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.7E-8 | 101 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.87E-5 | 106 | 130 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-7 | 106 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MADRYGTKSR SSSLESEEDM SSLLRNLLHN SFTSLPSSSS TSFNDQYKQS LSSPPPPLEI 60 FSQSGFRIRE GTSNSGSSVM VQSSTDFKFS DLEESTRNTS DDIGFDCKTD KASMLDEAIE 120 YLKQLQLQVQ MLSMRNGLSL NDLLLLGSLR PTQTELLNTK GGEDTFSGNQ EIWMRTSFDL 180 PNQCTPSNQQ NLTSPAKNIT SSETSLGLEP SIQNYY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080409.1 | 8e-55 | transcription factor SPATULA-like | ||||
TrEMBL | A0A2R6QY26 | 1e-96 | A0A2R6QY26_ACTCH; Transcription factor SPATULA like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-11 | bHLH family protein |