PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn336591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WOX | ||||||||
Protein Properties | Length: 216aa MW: 24545.7 Da PI: 8.9119 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 81 | 140 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++ +l +++ ++V++WFqN++a++++ Achn336591 81 TRWNPTQEQIGILEMLYRSgMRTPNAQQIEHITVQLgkygKIEGKNVFYWFQNHKARDRQ 140 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117.4 | 6.3e-38 | 81 | 142 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+sG+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaR+rqkq Achn336591 81 TRWNPTQEQIGILEMLYRSGMRTPNAQQIEHITVQLGKYGKIEGKNVFYWFQNHKARDRQKQ 142 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.042 | 76 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-12 | 77 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-7 | 78 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-5 | 81 | 142 | No hit | No description |
Pfam | PF00046 | 2.4E-18 | 81 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-8 | 82 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGSSSMKVHH QLSRGLFDHE PFLTLGCKSL RPLAPKLPHP HSGGAAFDLH TFIRPEYGPI 60 KLASPDNHLE TTQVETQPGG TRWNPTQEQI GILEMLYRSG MRTPNAQQIE HITVQLGKYG 120 KIEGKNVFYW FQNHKARDRQ KQKRNSLGLN HSPRSPTATI TTVTLDTRGQ VEREDSPYKR 180 KCRTWTFESL EEDEGFCCKE GDKTLELFPL HPEGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021689235.1 | 1e-109 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 9e-65 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A2R6QY44 | 1e-158 | A0A2R6QY44_ACTCH; WUSCHEL-related homeobox like | ||||
STRING | VIT_18s0001g10160.t01 | 1e-107 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 4e-67 | WUSCHEL related homeobox 4 |