PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn335731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 564aa MW: 63971.2 Da PI: 5.1309 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.9 | 3.9e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelvv+yLk+k++g+++el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++ Achn335731 6 LPPGFRFHPTDEELVVYYLKRKINGREIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QT 102 79****************************.99***************6434555777**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+grap+g +tdWvmheyrl Achn335731 103 RAVGMKKTLVFYRGRAPHGARTDWVMHEYRL 133 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.429 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV VYYLKRKING REIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVFYRGRAPH 120 GARTDWVMHE YRLDERECEI NTGLQDAYAL CRVFKKSATG PKIGDHYVAS TSNNQISSDH 180 SSGIDPYSEG RCDQDLDSSG YNHMTMDTTS SPNINMNITS TGATDDNWMR YLSEDAFGFN 240 ATSFANCGSV SYPPSKVDIA LECARLQHRL SLPPLEVQDF PQGGFFNMRM PQTSSVPHGN 300 TNEQDILQEI LSVAQVSQEL INQDSWGGNY AVSDDFSFLP SHADQFHGTT TSRSFDIGGH 360 VDEEFKIERS VENLRWVGMS SEELEKSFLE DYKTIPIESI SNFQRREGHE SQGERDDHSN 420 FNEFYENEAN NFSLGFIDET PNENFLDNGD VDDFSNTPSF EVYEKVEVNH GMFVSTCQVA 480 ETFFHQIVPS EIVKVYLNPA VIHNYTMTKA DSPTSRKTSR GLFGKFATFV AEKLKQTKQA 540 IRPWRKTMSP IITIVALVLT YCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-57 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-57 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028066844.1 | 0.0 | NAC domain-containing protein 45 isoform X2 | ||||
TrEMBL | A0A2R6Q1K3 | 0.0 | A0A2R6Q1K3_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_04s0079g00280.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1495 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-165 | NAC domain containing protein 28 |