PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn335731

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 564aa MW: 63971.2 Da PI: 5.1309

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn335731	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.9	3.9e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelvv+yLk+k++g+++el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++ Achn335731 6 LPPGFRFHPTDEELVVYYLKRKINGREIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QT 102 79**************************.99***********6434555777**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+grap+g +tdWvmheyrl Achn335731 103 RAVGMKKTLVFYRGRAPHGARTDWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	62.429	6	156	IPR003441	NAC domain
Pfam	PF02365	2.8E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV VYYLKRKING REIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVFYRGRAPH 120 GARTDWVMHE YRLDERECEI NTGLQDAYAL CRVFKKSATG PKIGDHYVAS TSNNQISSDH 180 SSGIDPYSEG RCDQDLDSSG YNHMTMDTTS SPNINMNITS TGATDDNWMR YLSEDAFGFN 240 ATSFANCGSV SYPPSKVDIA LECARLQHRL SLPPLEVQDF PQGGFFNMRM PQTSSVPHGN 300 TNEQDILQEI LSVAQVSQEL INQDSWGGNY AVSDDFSFLP SHADQFHGTT TSRSFDIGGH 360 VDEEFKIERS VENLRWVGMS SEELEKSFLE DYKTIPIESI SNFQRREGHE SQGERDDHSN 420 FNEFYENEAN NFSLGFIDET PNENFLDNGD VDDFSNTPSF EVYEKVEVNH GMFVSTCQVA 480 ETFFHQIVPS EIVKVYLNPA VIHNYTMTKA DSPTSRKTSR GLFGKFATFV AEKLKQTKQA 540 IRPWRKTMSP IITIVALVLT YCF*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV VYYLKRKING REIELEVIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVFYRGRAPH  120
GARTDWVMHE YRLDERECEI NTGLQDAYAL CRVFKKSATG PKIGDHYVAS TSNNQISSDH  180
SSGIDPYSEG RCDQDLDSSG YNHMTMDTTS SPNINMNITS TGATDDNWMR YLSEDAFGFN  240
ATSFANCGSV SYPPSKVDIA LECARLQHRL SLPPLEVQDF PQGGFFNMRM PQTSSVPHGN  300
TNEQDILQEI LSVAQVSQEL INQDSWGGNY AVSDDFSFLP SHADQFHGTT TSRSFDIGGH  360
VDEEFKIERS VENLRWVGMS SEELEKSFLE DYKTIPIESI SNFQRREGHE SQGERDDHSN  420
FNEFYENEAN NFSLGFIDET PNENFLDNGD VDDFSNTPSF EVYEKVEVNH GMFVSTCQVA  480
ETFFHQIVPS EIVKVYLNPA VIHNYTMTKA DSPTSRKTSR GLFGKFATFV AEKLKQTKQA  540
IRPWRKTMSP IITIVALVLT YCF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-57	1	162	15	174	NAC domain-containing protein 19
4dul_A	1e-57	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-57	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028066844.1	0.0	NAC domain-containing protein 45 isoform X2
TrEMBL	A0A2R6Q1K3	0.0	A0A2R6Q1K3_ACTCH; NAC domain-containing protein
STRING	VIT_04s0079g00280.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-165	NAC domain containing protein 28