PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn335281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 1235aa    MW: 137504 Da    PI: 6.7329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn335281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM224.5e-0710521107149
         NAM    1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpk 49  
                  lp+G++F+P+d+el+ e+L++k+ ++       +   +    +++   +i++++P++Lp 
  Achn335281 1052 LPAGVKFDPSDQELL-EHLEAKAWSDAhklhplI---DefipTLEGEdGICYTHPERLPG 1107
                  799************.999999888873454332...132222444435*********94 PP
2NAM348.9e-111107114987128
         NAM   87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 
                  gk++++l+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Achn335281 1107 GKTRPILH-NGKVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 1149
                  899*****.999***********6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.8E-3825201IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082634.3E-102564IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520583.74E-5541373IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003693491115IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036982139162IPR003591Leucine-rich repeat, typical subtype
PfamPF138552.5E-9140199IPR001611Leucine-rich repeat
SMARTSM00369150187211IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.102.0E-44205364IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369120212235IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036911236260IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520586.97E-44332539IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.3E-37365538IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369200499523IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF561128.99E-45624878IPR011009Protein kinase-like domain
PROSITE profilePS5001113.277633882IPR000719Protein kinase domain
PfamPF000697.4E-14635731IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.201.0E-20639705No hitNo description
PROSITE patternPS001070639662IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.105.6E-7706751No hitNo description
Gene3DG3DSA:1.10.510.101.5E-12756877No hitNo description
PfamPF077141.9E-4785878IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE profilePS5100512.14310061168IPR003441NAC domain
SuperFamilySSF1019411.44E-2410471168IPR003441NAC domain
PfamPF023657.6E-810531149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1235 aa     Download sequence    Send to blast
MKTTTMLALA LLLFLSLPQL SHQLNQEGLF LQRVKLGLSN PSGYLSDWND RDENPCGWTG  60
VNCDSMNSSV TSVDLSNASL AGPFPIFLCR LPSLSSISLY NNSLNSSLPL SISNCRNLVS  120
LNLAENLLKG PIPYTLAEIP NLTHLILQAN SFSGVIPASF ALFRRLETLN LASNLLNGTI  180
PAFLSNLTSL KWLGLAYNPF VPTRLAPEFG NLTNLETLWL SNCNIVGSIS ERFGQLSRLT  240
DLDVSNNLLS GTIPAVIFRL RSIVQIELYN NWFSGQFPSG WSNLTELRRF DASMNELTGP  300
IPNELCELPL ESLNLCDNKL VGLLPESIAL SPNLNEFKVF NNSLHGSLPS QLGKHSPLQT  360
FDVSSNNFSG EIPASLCDKG VLEQLLLIQN SFSGTIPASL GKCKTLTRVR LRDNRFSGEI  420
PVEFWSLPHV DLLDLGENSF SGPISYMISG ASNLSVLYIS KNRFSGTIPK EIGSIANLLE  480
ISASDNELSG QIPSTIVNLD QLGRLDLRNN KLSGDVPMGI GSLKQLNELN LANNGLSAPL  540
YAKAMYRDSF LGNPGLCGDI PSLCTRKDGV KNRRYLWLLR SLFILAGIVF VVGFVWFGWK  600
FLNFRKTKKG ITMLKWRSFH KLVFSEFEIL NCIDEDNVIG SGSSGKVYKA VLSNGEVVAV  660
KKLCERPKID NESFTNVSSE KDAFEVEVET LGKIRHKNIV RLWCCCNTGD CKLLVYEYMP  720
NGSLGDLLHS SKSDLLDWPT RFRIALDAAE ANRGAEPMSA ITGSCGYIAP DAVLFGLNPT  780
AEYAYTLRVN EKSDIYSFGV VILELVTGRR PIDPEFGEKD LVTWVCNSLD QKGTNHVIDP  840
NLDSAFKEQI SKVLDIGLLC VSSLPSIRPS MRRVVKLLQE CYKYGEPGHR TAECRKGQRQ  900
EKNLFMETKE ETEERNGKTD STTESKEPIN PELDELIKGD CGPLLVHTSR ALNRVINALI  960
REAWFLTLMH TKVLSFDSLC DILFADPFFS VVLDDVAAGN HSDFHAQDGF LFKGNQLYVP  1020
YSSLRLKIIR ELHDEGNVDL IQQTGIHNLP GLPAGVKFDP SDQELLEHLE AKAWSDAHKL  1080
HPLIDEFIPT LEGEDGICYT HPERLPGKTR PILHNGKVKG YKKILVLYTN YGKQKKPEKT  1140
NWVMHQYHLG NNEDERDGEL VVSKVFYQTQ PRQCGSITKE PSPKKSKGRT RHQNPRFNDH  1200
NTLVEYCNPS LISFDQRDRD RTSSRPVIPN FNIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ixo_A1e-170245667601Receptor-like protein kinase 5
5ixq_A1e-170245667601Receptor-like protein kinase 5
5ixt_A1e-170245667601Receptor-like protein kinase 5
5iyv_A1e-170245667601Receptor-like protein kinase 5
5iyx_A1e-170245667601Receptor-like protein kinase 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028105367.10.0LOW QUALITY PROTEIN: receptor-like protein kinase HSL1
SwissprotQ9SGP20.0HSL1_ARATH; Receptor-like protein kinase HSL1
TrEMBLA0A2R6QXG30.0A0A2R6QXG3_ACTCH; Receptor-like protein kinase
STRINGXP_010093960.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.14e-70NAC domain containing protein 73
Publications ? help Back to Top
  1. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  2. Stenvik GE, et al.
    The EPIP peptide of INFLORESCENCE DEFICIENT IN ABSCISSION is sufficient to induce abscission in arabidopsis through the receptor-like kinases HAESA and HAESA-LIKE2.
    Plant Cell, 2008. 20(7): p. 1805-17
    [PMID:18660431]
  3. Gou X, et al.
    Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana.
    BMC Genomics, 2010. 11: p. 19
    [PMID:20064227]
  4. Joshi HJ, et al.
    MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.
    Plant Physiol., 2011. 155(1): p. 259-70
    [PMID:21075962]
  5. ten Hove CA, et al.
    Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set.
    Plant Mol. Biol., 2011. 76(1-2): p. 69-83
    [PMID:21431781]
  6. Stø IM, et al.
    Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2.
    Front Plant Sci, 2015. 6: p. 931
    [PMID:26579174]
  7. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  8. Oh ES, et al.
    Biochemical Analysis of the Role of Leucine-Rich Repeat Receptor-Like Kinases and the Carboxy-Terminus of Receptor Kinases in Regulating Kinase Activity in Arabidopsis thaliana and Brassica oleracea.
    Molecules, 2018.
    [PMID:29361797]