PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn335241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 401aa    MW: 44271.9 Da    PI: 8.7716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn335241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-052848323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cgk F r  nL+ H r H
  Achn335241 28 CEICGKGFQRDQNLQLHRRGH 48
                *******************88 PP
2zf-C2H213.80.00018102124123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  Achn335241 102 WKCEKCSKRYAVQSDWKAHSKTC 124
                 58*****************9998 PP
3zf-C2H211.70.00078132150523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr++++ +H   +
  Achn335241 132 DCGTVFSRRDSFITHRAFC 150
                 8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-52548IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-62548No hitNo description
PROSITE profilePS5015711.4892648IPR007087Zinc finger, C2H2
SMARTSM003550.0762648IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-490123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-697122No hitNo description
SMARTSM00355130102122IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDPYFSDPEA EVIALSPKTL MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK  60
EPRKRVYVCP ERACVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH  120
SKTCGTREYK CDCGTVFSRR DSFITHRAFC DALAEETARV ATATSMNNFS ISNNNISYHF  180
IGTNPLGPAT PQHFSPIFKP ISAFDQPIDP MSRRPPLWPH QSTLVHEPMG SIGSVSSGAA  240
YNDPIVPCPN PSPTDQYQLN WVFGNKIGTI PPLYSIQTPS ATTSATALLQ KAAQIGATSS  300
DQTFLGSLGY KCNNSQGQDG NKLCGLYGTT PEMTIHGSDL ESSSVTDIST INQFQMYPSK  360
RRNIQSEDGG GGGQTRDFLG VGNGVQFQPI CHPSSDNGWI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3698175372Zinc finger protein JACKDAW
5b3h_F1e-3698175372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114182.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-133IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2R6QC130.0A0A2R6QC13_ACTCH; Zinc finger protein like
STRINGEOX995370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-117C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]