PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn330471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 388aa    MW: 43222.5 Da    PI: 9.8817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn330471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.54.5e-1589176186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ +++   + +qCk++++ ++k+yk+++     +  +  s++p+f++l+
  Achn330471  89 CWSEGATSVLIDAWGERYMELSRGNLKQKHWKEVADIVsSREDYTKppkTDIQCKNRIDTVKKKYKAENSKIVAG--GGPSKWPFFERLD 176
                 7*************************************856667652226679****************999987..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2687178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNEIIRFHAA LPRVHPSIGD SKLTGELTME DDEEIQSHLS PDTGSPVSPP NGRITVTVAA  60
APSQNNTLTL ALPIQQPRPA GNGGGREDCW SEGATSVLID AWGERYMELS RGNLKQKHWK  120
EVADIVSSRE DYTKPPKTDI QCKNRIDTVK KKYKAENSKI VAGGGPSKWP FFERLDHLIG  180
QTAKTAGGSA SIPSIPSGGH KVPMGIPVGV RSAQQFQLHQ KQQQQNQKQK QKQKLRRQAP  240
IDSDSSGSES EPPSPDSIDS FPPETYVPKR PRMQREMNLS AVRPAMNQRS KDGAESEKNW  300
GNSVRELTRA ILKFGEAYEQ AESSKLQQLV EMEKQRMKFA KELELQRMQF FMKTQLELSQ  360
LKHRRAGNSN HHNNNNNINN NNSDCSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106784.11e-161trihelix transcription factor ASIL2
SwissprotQ9LJG81e-101ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6QFA10.0A0A2R6QFA1_ACTCH; Trihelix transcription factor
STRINGVIT_09s0002g00720.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-68sequence-specific DNA binding transcription factors