PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn330151

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 336aa MW: 36888.7 Da PI: 5.9235

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn330151	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.8	4.6e-30	40	143	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q ++e+ Achn330151 40 SCNGCRVLRKGCSDNCSIRPCLqwiksPESQANATVFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIANPIYGSVGLLWSGNWLLCQNAVEA 138 6************************************************************************************************99 PP DUF260 95 allke 99 +l ++ Achn330151 139 VLNGS 143 88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.549	39	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-24	40	138	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MITCSETFQT GDSTDYRDSI QLNYIIGLGI ESKLVAMRMS CNGCRVLRKG CSDNCSIRPC 60 LQWIKSPESQ ANATVFLAKF YGRAGLINLI NAGPDHLRPA IFRSLLYEAC GRIANPIYGS 120 VGLLWSGNWL LCQNAVEAVL NGSPITQIGS EAAECDNGPP LKAYDIRHVS KEDSPAGSKD 180 LHRVRSRCRF KRSAAKPKAS RVWSAPVEDS GHDELNRSTS HESSLSHVSE AVAAAELNME 240 GESREVESVL NPNEEADDGE IELELTLGFE PSSRSHNASP KRKSTCRLGD SFDDGACRIV 300 LGLDYPSLFF FFFFGLVCFV LNFGFTFLPF VQSYM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	1e-133	LOB domain-containing protein 41
Swissprot	Q9M886	7e-99	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2R6RUC6	0.0	A0A2R6RUC6_ACTCH; LOB domain-containing protein
STRING	XP_009607764.1	1e-123	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-93	LOB domain-containing protein 41