PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn327871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 22993 Da PI: 9.6674 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.7 | 9.1e-19 | 42 | 126 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vG +r+ +s++s+r+g+i++r + C ++++++ + ++r r gC+a++ vkke ++ w v k++ +HnH+l+ Achn327871 42 FYDEYATRVGLVTRVLSSRRSERDGSIISRGLGCRDGPYSKQSEGV---ALQKRDRRRDGCTAMILVKKE-KSGWAVRKFVRDHNHPLV 126 9*********************************887777766555...88999999*************.899*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-17 | 42 | 126 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEDGAGIIVA SVGGELSSGE FEGNQEPVEG MLFDTEEAAR AFYDEYATRV GLVTRVLSSR 60 RSERDGSIIS RGLGCRDGPY SKQSEGVALQ KRDRRRDGCT AMILVKKEKS GWAVRKFVRD 120 HNHPLVVSLP NRRTNLDEKD RKIQELTAEL RVKKRLSTAY RDQLLSLMKD VEEHNENLST 180 KAQVVLNKLK ELDAKRKDLS HHR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122841.1 | 1e-110 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
TrEMBL | A0A2R6S0S0 | 1e-146 | A0A2R6S0S0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment) | ||||
STRING | XP_009764129.1 | 5e-92 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-54 | FAR1 family protein |