PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn325861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 519aa    MW: 60211 Da    PI: 9.1817
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn325861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.51.6e-211197189
        FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                +fY++YA+++GFsvrk++ k++ ++g +++rt++Csk+g+r  +k++ e+   +++ tr+gC a+++  ++k+gk++v  ++ eHnH++
  Achn325861 11 DFYCKYAHRIGFSVRKQYVKRT-KTGLVKRRTYCCSKQGERLVDKQR-EQVFYHHSITRVGCMAQMTCLLQKNGKFKVVAFNAEHNHAF 97
                6*****************9998.7888***************99998.99999**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-181197IPR004330FAR1 DNA binding domain
PfamPF105517.7E-25220297IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEFDTGDIAF DFYCKYAHRI GFSVRKQYVK RTKTGLVKRR TYCCSKQGER LVDKQREQVF  60
YHHSITRVGC MAQMTCLLQK NGKFKVVAFN AEHNHAFAIS PMKHMLRSQK KIMPAQKAQA  120
ENAEKSGISN KATVDLMSRQ VGGREYLGFM EVDYKNYIYT KRRMEMQKGD AGAVLEYFQM  180
MKSNDHSFFY SIQLDNDDLI TNIFWADSRS VVDYGHFGDV VCFDTTYRTN EYGRPFAPFI  240
GVNHHKQTVI FGGALLYDET AESFKWLFET FLSAMSGKQP KTILTDQSAA MAKAIMQDNK  300
WLQSIYEERQ KWAMVYGRYM FTADMKSTQR SESMNIVLKQ YLNSKYNLLR FSEHYTRLLE  360
DRRYKELIAE FKMRQSIPVL PACVEMLKHA VDVYTPETIM DWRYIQGNPQ ESIGKRYAYL  420
SNDFREVTTL AAEDENMYAY AQSCLTKLLK DLQEMKKQCC YSNLGGRTCT QEETLVDANL  480
QSENVPQVDN SVTLRAIRGI KTKATVGRPR NKLKDPLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024196121.11e-160protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9I2700.0A0A2N9I270_FAGSY; Uncharacterized protein
STRINGXP_006406281.11e-163(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-68FAR1-related sequence 5