PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn324281

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 833aa MW: 95343.6 Da PI: 8.1919

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn324281	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.6e-26	97	205	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY+eYAk+vGF +++s++s+ +g++++++fvC+++g+++e++++ +++ r++r+ ++t+Cka+++vk+++ g+w+v + Achn324281 97 SFYKEYAKSVGFAAIIKASRRSRITGNFIDAKFVCTRYGSKRESTTSetlepvpnadrtasiplkKKRGRKSRSWSKTDCKACMHVKRSQYGRWVVRAF 195 5***************************************999999************99999************************** PP FAR1 82 eleHnHelap 91 +eHnHe++p Achn324281 196 IKEHNHEIFP 205 *****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-24	97	205	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-32	322	415	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	602	638	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-7	610	636	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.4E-7	613	640	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MVMRGIDLEQ PSGEHHKEDN GPHVNVNNDD PGVHNSDGAT ASKNSERDKE NTGPNLSGCT 60 SNSKHKVHAA DGVAVNSHTN IEPNDGMEFE SKEDAFSFYK EYAKSVGFAA IIKASRRSRI 120 TGNFIDAKFV CTRYGSKRES TTSETLEPVP NADRTASIPL KKKRGRKSRS WSKTDCKACM 180 HVKRSQYGRW VVRAFIKEHN HEIFPDQAYY FRGHRNIDLG NSNVDALHAI RARTKRMFVT 240 MSRQSGGPKK VRNQKSGISN ITQQHLRLDE GDAQAMLEYF MDMQDENPNF FYALDFNEEQ 300 RLRNIFWVDA KGRLDYGSFE DVVLFDTTYI KNEYKLPFAH FIGVNHHCQP LLLGCALIAD 360 ETKSTYSWVM RAWLRAMGRQ SPKVILTDQD KALKEATAEV LPDARHCFCM WHILSKIPEK 420 LSYVLRQHEN FMSKFNKCIF RSSTVEKYEK RWWKMVDIFN LRNDVWLQSL YEDREQWIPT 480 YMKDILLAGM SPTERSESIS SIFDKYMQRK TTLKEFLDQC KAILQDKCEE EAKADFETWH 540 KQPGLKSPSP FGKQMATIYT HAIFKKFQVE VLGVVACHPK KESGEGANIT FKVQDFEDNQ 600 DFIVVWNETT SDTSCSCRLF EYNGFLCRHV MIVLQMSGVH SIPSHYILKR WTKDAKSRQI 660 RRQGSDMVES RVQRYNDICR QAFKLGDEGS LSQESYNIAF NALAEALKKC ECVNNSIQNV 720 LEPGSPSAHA LHEFEDGNQG KISRKTNNKS IIARKGQVQS EPEIITMGMH DSWQQMGQLN 780 SMAPSRDDYF GNQHSMQGLG QLNSIAPIHD GHYLPQHRMH GLDQSDPGST QV*

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MVMRGIDLEQ PSGEHHKEDN GPHVNVNNDD PGVHNSDGAT ASKNSERDKE NTGPNLSGCT  60
SNSKHKVHAA DGVAVNSHTN IEPNDGMEFE SKEDAFSFYK EYAKSVGFAA IIKASRRSRI  120
TGNFIDAKFV CTRYGSKRES TTSETLEPVP NADRTASIPL KKKRGRKSRS WSKTDCKACM  180
HVKRSQYGRW VVRAFIKEHN HEIFPDQAYY FRGHRNIDLG NSNVDALHAI RARTKRMFVT  240
MSRQSGGPKK VRNQKSGISN ITQQHLRLDE GDAQAMLEYF MDMQDENPNF FYALDFNEEQ  300
RLRNIFWVDA KGRLDYGSFE DVVLFDTTYI KNEYKLPFAH FIGVNHHCQP LLLGCALIAD  360
ETKSTYSWVM RAWLRAMGRQ SPKVILTDQD KALKEATAEV LPDARHCFCM WHILSKIPEK  420
LSYVLRQHEN FMSKFNKCIF RSSTVEKYEK RWWKMVDIFN LRNDVWLQSL YEDREQWIPT  480
YMKDILLAGM SPTERSESIS SIFDKYMQRK TTLKEFLDQC KAILQDKCEE EAKADFETWH  540
KQPGLKSPSP FGKQMATIYT HAIFKKFQVE VLGVVACHPK KESGEGANIT FKVQDFEDNQ  600
DFIVVWNETT SDTSCSCRLF EYNGFLCRHV MIVLQMSGVH SIPSHYILKR WTKDAKSRQI  660
RRQGSDMVES RVQRYNDICR QAFKLGDEGS LSQESYNIAF NALAEALKKC ECVNNSIQNV  720
LEPGSPSAHA LHEFEDGNQG KISRKTNNKS IIARKGQVQS EPEIITMGMH DSWQQMGQLN  780
SMAPSRDDYF GNQHSMQGLG QLNSIAPIHD GHYLPQHRMH GLDQSDPGST QV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028055460.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2R6QME9	0.0	A0A2R6QME9_ACTCH; Protein FAR-RED IMPAIRED RESPONSE like
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]