PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn324281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 833aa MW: 95343.6 Da PI: 8.1919 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.5 | 3.6e-26 | 97 | 205 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY+eYAk+vGF +++s++s+ +g++++++fvC+++g+++e++++ +++ r++r+ ++t+Cka+++vk+++ g+w+v + Achn324281 97 SFYKEYAKSVGFAAIIKASRRSRITGNFIDAKFVCTRYGSKRESTTSetlepvpnadrtasiplkKKRGRKSRSWSKTDCKACMHVKRSQYGRWVVRAF 195 5*****************************************999999****************99999****************************** PP FAR1 82 eleHnHelap 91 +eHnHe++p Achn324281 196 IKEHNHEIFP 205 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-24 | 97 | 205 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.9E-32 | 322 | 415 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.373 | 602 | 638 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-7 | 610 | 636 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.4E-7 | 613 | 640 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence Send to blast |
MVMRGIDLEQ PSGEHHKEDN GPHVNVNNDD PGVHNSDGAT ASKNSERDKE NTGPNLSGCT 60 SNSKHKVHAA DGVAVNSHTN IEPNDGMEFE SKEDAFSFYK EYAKSVGFAA IIKASRRSRI 120 TGNFIDAKFV CTRYGSKRES TTSETLEPVP NADRTASIPL KKKRGRKSRS WSKTDCKACM 180 HVKRSQYGRW VVRAFIKEHN HEIFPDQAYY FRGHRNIDLG NSNVDALHAI RARTKRMFVT 240 MSRQSGGPKK VRNQKSGISN ITQQHLRLDE GDAQAMLEYF MDMQDENPNF FYALDFNEEQ 300 RLRNIFWVDA KGRLDYGSFE DVVLFDTTYI KNEYKLPFAH FIGVNHHCQP LLLGCALIAD 360 ETKSTYSWVM RAWLRAMGRQ SPKVILTDQD KALKEATAEV LPDARHCFCM WHILSKIPEK 420 LSYVLRQHEN FMSKFNKCIF RSSTVEKYEK RWWKMVDIFN LRNDVWLQSL YEDREQWIPT 480 YMKDILLAGM SPTERSESIS SIFDKYMQRK TTLKEFLDQC KAILQDKCEE EAKADFETWH 540 KQPGLKSPSP FGKQMATIYT HAIFKKFQVE VLGVVACHPK KESGEGANIT FKVQDFEDNQ 600 DFIVVWNETT SDTSCSCRLF EYNGFLCRHV MIVLQMSGVH SIPSHYILKR WTKDAKSRQI 660 RRQGSDMVES RVQRYNDICR QAFKLGDEGS LSQESYNIAF NALAEALKKC ECVNNSIQNV 720 LEPGSPSAHA LHEFEDGNQG KISRKTNNKS IIARKGQVQS EPEIITMGMH DSWQQMGQLN 780 SMAPSRDDYF GNQHSMQGLG QLNSIAPIHD GHYLPQHRMH GLDQSDPGST QV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028055460.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A2R6QME9 | 0.0 | A0A2R6QME9_ACTCH; Protein FAR-RED IMPAIRED RESPONSE like | ||||
STRING | VIT_01s0011g01470.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |