PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn323811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 24602.7 Da PI: 6.7778 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e++++LAkk+gL+ rqV+vWFqN+Ra++k Achn323811 63 KKRRLTPEQVHLLEQSFEEENKLEPERKTQLAKKVGLQPRQVTVWFQNHRARWK 116 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.7 | 2.4e-41 | 62 | 152 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv+lLE+sFeee+kLeperK++la+++glqprqv vWFqn+RAR+ktk+lE++y+ Lk++y++l +e ++++ke+e+L++el Achn323811 62 EKKRRLTPEQVHLLEQSFEEENKLEPERKTQLAKKVGLQPRQVTVWFQNHRARWKTKHLEREYDCLKSSYESLISECDSIHKENEKLKAEL 152 69**************************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.119 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-19 | 61 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-19 | 63 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.15E-17 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 1.5E-17 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 64 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.8E-5 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.8E-5 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-12 | 118 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDSGRLFFDP SRYGNMFFGN SDPIFRGPRS VMGLQEPLKR RTFFTSPDEV FDEEYYDEQL 60 PEKKRRLTPE QVHLLEQSFE EENKLEPERK TQLAKKVGLQ PRQVTVWFQN HRARWKTKHL 120 EREYDCLKSS YESLISECDS IHKENEKLKA ELGSEHCVYT QGDDSLAVLF QPSAFSSIPT 180 CCKSHNVLYY QLAIRFTSKK AVSSELNCLN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183510.1 | 1e-81 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 3e-59 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2R6P9C1 | 1e-106 | A0A2R6P9C1_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | XP_009622827.1 | 3e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-61 | homeobox 1 |
Publications ? help Back to Top | |||
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