PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn322871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 169aa    MW: 18767.3 Da    PI: 8.465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn322871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ss
  Achn322871  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALILFSSRGKLYEFSS 59
                79***********************************************96 PP
2K-box51.54.3e-18591113385
       K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                 ++ R+llGe+Le L+ keL+qLe+qLe+slk+iRskK e   ++ +++q  e 
  Achn322871  59 STSRNLLGEELEALTTKELEQLERQLENSLKQIRSKKLEETNAESHQQQSWEA 111
                 688**********************************9999999888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.768161IPR002100Transcription factor, MADS-box
CDDcd002656.38E-41261No hitNo description
SuperFamilySSF554551.44E-30280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.02640124IPR002487Transcription factor, K-box
PfamPF014863.6E-1256104IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALILFSS RGKLYEFSST  60
SRNLLGEELE ALTTKELEQL ERQLENSLKQ IRSKKLEETN AESHQQQSWE AGGQTIPFNL  120
IPAHSEGFFQ PLGLNSTLQL GYNAVGANEI NAAATAQNSN GFLPGWMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21161161MEF2C
5f28_B3e-21161161MEF2C
5f28_C3e-21161161MEF2C
5f28_D3e-21161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3736011e-47AF373601.1 Vitis vinifera MADS-box protein 2 (MADS2) mRNA, complete cds.
GenBankAM4561031e-47AM456103.1 Vitis vinifera contig VV78X003633.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052192.12e-76MADS-box protein EJ2-like
SwissprotQ8LLR21e-71MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2R6PD651e-103A0A2R6PD65_ACTCH; MADS-box protein
STRINGXP_010257958.12e-71(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.31e-36MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]