PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn322811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 474aa    MW: 52118.8 Da    PI: 7.4964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn322811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.00027242259219
                 HHHHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsa 19 
                 r +h++ E+rRR++iN++
  Achn322811 242 RSKHSATEQRRRSKINDR 259
                 889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-4237259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.58E-6237303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-4242280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGARGYLQTH DFLQPLEGLG KSNTKEEGTV EIPTPEKPLP PAPPSSGEHV LPGGIGTYSI  60
SHISYFNQRP LKPEGGTFTV AQSSITDRNE ENSNCSSYTG SGFTLWAEST VKKGKTGKEN  120
VAGDRHASRV AGEKTGVGGQ WMMSERPSQS SSNTNTMTAN HRNATTTFSS LSSSQPPSSQ  180
KSQTFMDRLK SAKVAHDEDE EEEDFVLKKE PSPHLRTLTG DFTVKVGGWG GKINYEKPNT  240
PRSKHSATEQ RRRSKINDRH VHPNSYSVIE YIQYLQEKVH KYEGSYQGWD QEPPKLMPWR  300
NSHSPADGFV DQSRATNSGS GAPLLFPAKF DENNVNVSSP TNPRNGQDAV ECDMRNVATL  360
KAMDHHPVST NKAVLLPVTL QPNIFTPSGS GNAIAPIPAR VVSDIDNVTS QPQYQFFQSR  420
SHTTDCAVAS NKLKEQELTI ESVLFTHCYR TQLRYFDYGV SKALLDIGFL IVN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123434.10.0transcription factor BIM2-like isoform X2
TrEMBLA0A2R6PD540.0A0A2R6PD54_ACTCH; Transcription factor like
STRINGXP_002514597.11e-144(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.59e-57bHLH family protein