PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn319151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 28107.7 Da PI: 5.4441 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksFs+ H+rtH Achn319151 4 FTCQICSKSFSNGKAVGGHMRTH 26 89********************9 PP | |||||||
2 | zf-C2H2 | 18.2 | 6.6e-06 | 198 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k+F+++ L H++ H Achn319151 198 YACEFCPKVFKSRQALGGHMKIH 220 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.55E-11 | 4 | 26 | No hit | No description |
Pfam | PF13912 | 1.6E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.5E-4 | 4 | 26 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.016 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.55E-11 | 193 | 220 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 196 | 221 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.2E-5 | 198 | 220 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.9E-4 | 198 | 220 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.177 | 198 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 200 | 220 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MARFTCQICS KSFSNGKAVG GHMRTHLAFH LLPPKPQGPQ EFEDLNKASP SMPLRFVTGK 60 RSRQCKSMDA MVDIPEEVKT PGLVSVTSPI EDVALSIMML AKGKWKDDKE EKEKEKGKQK 120 MEEDNIISEN ESKEGDDDND EDEDDDYVFY PKRTWTGIHT QMVTRAKARE VTCGEGHPSD 180 QMLENHKSEP NEIDARLYAC EFCPKVFKSR QALGGHMKIH ASTSSDSVKP KINLINLNRP 240 PPEEDDEIN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6PMN1 | 1e-154 | A0A2R6PMN1_ACTCH; Zinc finger protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-09 | C2H2-like zinc finger protein |