PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn318511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 957aa    MW: 106937 Da    PI: 4.9913
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn318511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i 
    Achn318511  25 FLSKTYDMVDDPSTDSIVSWSNSKNSFVVWNVPEFTRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKIIS 112
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn318511 113 RRKA 116
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-3917108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-3520114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004150.0013497560IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-4522560IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MEGGQDAEMM ASSASSAIAN SPPPFLSKTY DMVDDPSTDS IVSWSNSKNS FVVWNVPEFT  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKI ISRRKAAHVQ  120
SHQQPPQVQD KSVGSCFELG KFGIDEDVER LKRDKNALMQ ELFRLKQLQQ ATDHQLQTVG  180
QRVQVMEQRQ QHMMTFLAKA MKSPGFLAQL VQQQNESNRR ISGVNKKRRL PSQEEESNSI  240
CKHGAASADG QIVKYQPLMN EAAKSMLRQI LKMNASPRFE PPINSPIGFF LDDLPSPSRV  300
LDRDSSASRV SGVTLSEVLP ISSECYSSID FGMPVSCAAT VSEIQSPPCV SSGLAKVATF  360
PEMDISSQED TVLPNFSQVQ GIIPESTEEV SDLNFYVSDT GNPGYIDAIP GFIDGPMPVV  420
TDEFSSDHEV DNITDEIPKL PGINDVFWEQ FLSASPRTMY TDEIISNTSE DKVPVLSLIQ  480
LNRAQYSCNS PLYPLNQGPV LWTLLADLIN KDFKSKPVAC TFCFYLLKQG FRKVDPDRWE  540
FANEGFLRGQ KHLLKIISRR KAAHVQSHQQ PPQVQDKSVG SCFELGKFGI DEDVERLKRD  600
KNVLMQELFR LKQLQQATDH QLQTVGQRVQ VMEQRQQHMM TFLAKAMKSP GFLAQLVQQQ  660
NESNRRISGV NKKRRLPSQE EESNSICKHG AASADGQIVK YQPLMNEAAK SMLRQILKMN  720
ASPRFEPPIN SPIGFFLDDL PSPSRVLDRD SSASRVSGVT LSEVLPISSE CYSSIDFGMP  780
VSCAATVSEI QSPPCVSSGL AKVATFPEMD ISSQEDTVLP NFSQVQGIIP ESTEEVSDLN  840
FYVSDTGNPG YIDAIPGFID GPMPVVTDEF SSDHEVDNIT DEIPKLPGIN DVFWEQFLSA  900
SPRTMYTDEI ISNTSEGYIG KEPDWQNDQE SGWNKNQHMN HLTDQMVLLA AEAKRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2511148129Heat shock factor protein 1
5d5v_B2e-2511148129Heat shock factor protein 1
5d5v_D2e-2511148129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125849.10.0heat stress transcription factor A-1-like
RefseqXP_028125850.10.0heat stress transcription factor A-1-like
SwissprotQ84T611e-148HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2R6Q9H80.0A0A2R6Q9H8_ACTCH; Heat stress transcription factor A-1 like
STRINGVIT_16s0039g01840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-130heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]