PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn318421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 344aa MW: 38896.5 Da PI: 7.9879 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00062 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksF + +L H+r+H Achn318421 4 HKCKLCLKSFANGRSLGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 266 | 288 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Achn318421 266 HECPYCFRVFSSGQALGGHKRSH 288 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.5E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.049 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.9E-10 | 220 | 244 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.38E-8 | 220 | 288 | No hit | No description |
PROSITE profile | PS50157 | 9.619 | 220 | 247 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 220 | 242 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 222 | 242 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-11 | 265 | 288 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 266 | 293 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 266 | 288 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 268 | 288 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEKHKCKLCL KSFANGRSLG GHMRSHMMNL CVPPKTEQHQ HLNDMDQLGS SSSSDDQEED 60 EDRSESLFYG LRENPKKSIR LVDREFSFAG SAVLIQDRES ETESSKNPIR RRSKRIRKSG 120 ISDYHHQFHV RNPKQVLDAK KSKSGMLGKT ESEPVSSISD TSPEEDVAYC LMMLSRDKWK 180 RDEKRANQLA ERGEEEENDQ TDDSDECFKS SKARGGRAKY ICETCFKVFR SYQALGGHRA 240 SHKKPRVQNN MVSEPEPESK NGEKVHECPY CFRVFSSGQA LGGHKRSHVT GSSSTTTKVA 300 PNKSKFVESL IDLNLPAPME EDEISQIELS AVSYAEFVKP IRQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278670.1 | 1e-112 | PREDICTED: zinc finger protein ZAT4 | ||||
TrEMBL | A0A2R6RCS5 | 0.0 | A0A2R6RCS5_ACTCH; Zinc finger protein | ||||
STRING | VIT_15s0021g02720.t01 | 1e-111 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-59 | C2H2-like zinc finger protein |