PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn318421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 344aa    MW: 38896.5 Da    PI: 7.9879
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn318421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C ksF +  +L  H+r+H
  Achn318421  4 HKCKLCLKSFANGRSLGGHMRSH 26
                79********************9 PP
2zf-C2H212.80.00036266288123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++Fs+   L  H r+H
  Achn318421 266 HECPYCFRVFSSGQALGGHKRSH 288
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-7427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868426IPR007087Zinc finger, C2H2
SMARTSM003550.049426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139124.9E-10220244IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-8220288No hitNo description
PROSITE profilePS501579.619220247IPR007087Zinc finger, C2H2
SMARTSM003550.39220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
PfamPF139124.5E-11265288IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328266293IPR007087Zinc finger, C2H2
SMARTSM003550.17266288IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEKHKCKLCL KSFANGRSLG GHMRSHMMNL CVPPKTEQHQ HLNDMDQLGS SSSSDDQEED  60
EDRSESLFYG LRENPKKSIR LVDREFSFAG SAVLIQDRES ETESSKNPIR RRSKRIRKSG  120
ISDYHHQFHV RNPKQVLDAK KSKSGMLGKT ESEPVSSISD TSPEEDVAYC LMMLSRDKWK  180
RDEKRANQLA ERGEEEENDQ TDDSDECFKS SKARGGRAKY ICETCFKVFR SYQALGGHRA  240
SHKKPRVQNN MVSEPEPESK NGEKVHECPY CFRVFSSGQA LGGHKRSHVT GSSSTTTKVA  300
PNKSKFVESL IDLNLPAPME EDEISQIELS AVSYAEFVKP IRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278670.11e-112PREDICTED: zinc finger protein ZAT4
TrEMBLA0A2R6RCS50.0A0A2R6RCS5_ACTCH; Zinc finger protein
STRINGVIT_15s0021g02720.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-59C2H2-like zinc finger protein