PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn318391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 438aa    MW: 47524.9 Da    PI: 6.7614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn318391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10259304555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h++ E rRR++iN+++ +L++l+P++      K + +++L +++e++k+Lq
  Achn318391 259 HSQSELRRREKINQRMKTLQQLVPNS-----SKIDEVSMLDEVIEHLKQLQ 304
                 8899*********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.12E-13250307No hitNo description
PROSITE profilePS5088814.621254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14258331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8259304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-13259312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSQCVPTWDL DEIPNPLAPL VPMLGGEVAE FPWEKDQVAR NGLSPPCVYD KPLATSSPTK  60
NTWMERPGGG GGTLESVVKQ ATRFRHRKPS AYGGGNDVVP CLDHRQAAAT GDALVPCAAA  120
APGQRIGSCG EGSSARVGSC SGPNTRGKRS LKRAKVARVP VAHVCSSCCD DDGDSDSDSE  180
SGRDSWRLSR DSSEWELGSR GFASSSIGSP ESTCSDEWST EATTCDDRDT ACHFRSQAIF  240
RELRAEEREK KARRTFGIHS QSELRRREKI NQRMKTLQQL VPNSSKIDEV SMLDEVIEHL  300
KQLQAQVVMM SRMMNMSYMM LPMALQQHLQ LSLMTSMGMG MRMGSGMGMG MGVMDINAAT  360
GFSNITAGIS PVPHPAAYMP LISWDRSGDC FSTPAMVVPD PVSTFLACQS QPTMDGYSRM  420
ASLYQQLHLP LLPGFNN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582839.11e-112transcription factor UNE10
TrEMBLA0A2R6RCU70.0A0A2R6RCU7_ACTCH; Transcription factor like
STRINGXP_002511647.11e-110(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-59bHLH family protein