PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn317861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 779aa MW: 90372 Da PI: 7.077 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.6 | 1e-23 | 97 | 183 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+++GF +++++s++sk++g++++ + C + g+++e+ ++ ++r+ +t+Cka++++k+++d+kw+++++++eHnHe++p Achn317861 97 SFYREYARSAGFGITIKASRRSKKSGKFIDVKIACCRFGRKSESGTT----VNSRSCPKTDCKASMHMKRRQDEKWYIHSFVKEHNHEICP 183 5*****************************************99888....9999*********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-21 | 97 | 183 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-25 | 265 | 358 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.345 | 550 | 581 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.7E-4 | 552 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.7E-5 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MEIDLELRSG QEDKLDTSSD TNIGDIDGLR AGEEEINSPI TSSSFKGNLR LNVGENISAR 60 GAAVEEDTPG LDTFGKEVKS CEPQNGLEFE TKEAAYSFYR EYARSAGFGI TIKASRRSKK 120 SGKFIDVKIA CCRFGRKSES GTTVNSRSCP KTDCKASMHM KRRQDEKWYI HSFVKEHNHE 180 ICPDDFYYAL RGRGKQSGLA ACQKKGLQVA LNEVDIQALS EFFMLMQDEN PNFFYAIDLD 240 NEKQMRNVFW VDSKSRHDYI NFSDVVFFDS NYFRNKYRVP FVPIVGVNNH FQLMMLGCAL 300 IGEETTSTFV WLMRTWLRSV GGQTPKLVIT DEGRLLEEAI TEVFPDTRHC LCLWNVLRKI 360 PENLDHIVNM SENFMTKFNK CIFRSWTKEE FEKKWWKIVD KFELREDEWL QSLYVNREKW 420 VPAYMNNTFL AGMCTTERSK CISSLFDKYL HKETSCKEFL DQYKVFLHDR SEEEAKSDFQ 480 AHHDLLALKS PSPFEKQMST VYTHAIFKKF QAEVLGIVSC SLQKKYEDEA IVTYRVDDFE 540 EQQNFIVAWN EVDLCICCLC HSFEYRGFLC RHAMIVLQMC GVSNIPSHYI LRRWTNEAKI 600 RQSNCEISSR FHYRVQRFND LCKRAINLGE EGSFSQETFN IVIYALQEAM ENCVGVNASV 660 KCVLEPNTLA NQGFLSTEEE NQTNIFAKAS KNKKIHKNLK GQLGFRAPTM HGCFNIQDSL 720 QDMVCVYLIR CNHSYYLCLM HILPNWLLSF YLLQEQSASS RKLHNIVSKR WHDKHLPQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028082808.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2-like isoform X2 | ||||
Swissprot | Q3EBQ3 | 0.0 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A2R6QCE9 | 0.0 | A0A2R6QCE9_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | VIT_03s0017g01830.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.3 | 0.0 | FAR1-related sequence 2 |
Publications ? help Back to Top | |||
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