PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn317861

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 779aa MW: 90372 Da PI: 7.077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn317861	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	97	183	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+++GF +++++s++sk++g++++ + C + g+++e+ ++ ++r+ +t+Cka++++k+++d+kw+++++++eHnHe++p Achn317861 97 SFYREYARSAGFGITIKASRRSKKSGKFIDVKIACCRFGRKSESGTT----VNSRSCPKTDCKASMHMKRRQDEKWYIHSFVKEHNHEICP 183 5***************************************99888....9999*******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-21	97	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-25	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.345	550	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-4	552	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-5	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MEIDLELRSG QEDKLDTSSD TNIGDIDGLR AGEEEINSPI TSSSFKGNLR LNVGENISAR 60 GAAVEEDTPG LDTFGKEVKS CEPQNGLEFE TKEAAYSFYR EYARSAGFGI TIKASRRSKK 120 SGKFIDVKIA CCRFGRKSES GTTVNSRSCP KTDCKASMHM KRRQDEKWYI HSFVKEHNHE 180 ICPDDFYYAL RGRGKQSGLA ACQKKGLQVA LNEVDIQALS EFFMLMQDEN PNFFYAIDLD 240 NEKQMRNVFW VDSKSRHDYI NFSDVVFFDS NYFRNKYRVP FVPIVGVNNH FQLMMLGCAL 300 IGEETTSTFV WLMRTWLRSV GGQTPKLVIT DEGRLLEEAI TEVFPDTRHC LCLWNVLRKI 360 PENLDHIVNM SENFMTKFNK CIFRSWTKEE FEKKWWKIVD KFELREDEWL QSLYVNREKW 420 VPAYMNNTFL AGMCTTERSK CISSLFDKYL HKETSCKEFL DQYKVFLHDR SEEEAKSDFQ 480 AHHDLLALKS PSPFEKQMST VYTHAIFKKF QAEVLGIVSC SLQKKYEDEA IVTYRVDDFE 540 EQQNFIVAWN EVDLCICCLC HSFEYRGFLC RHAMIVLQMC GVSNIPSHYI LRRWTNEAKI 600 RQSNCEISSR FHYRVQRFND LCKRAINLGE EGSFSQETFN IVIYALQEAM ENCVGVNASV 660 KCVLEPNTLA NQGFLSTEEE NQTNIFAKAS KNKKIHKNLK GQLGFRAPTM HGCFNIQDSL 720 QDMVCVYLIR CNHSYYLCLM HILPNWLLSF YLLQEQSASS RKLHNIVSKR WHDKHLPQ*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MEIDLELRSG QEDKLDTSSD TNIGDIDGLR AGEEEINSPI TSSSFKGNLR LNVGENISAR  60
GAAVEEDTPG LDTFGKEVKS CEPQNGLEFE TKEAAYSFYR EYARSAGFGI TIKASRRSKK  120
SGKFIDVKIA CCRFGRKSES GTTVNSRSCP KTDCKASMHM KRRQDEKWYI HSFVKEHNHE  180
ICPDDFYYAL RGRGKQSGLA ACQKKGLQVA LNEVDIQALS EFFMLMQDEN PNFFYAIDLD  240
NEKQMRNVFW VDSKSRHDYI NFSDVVFFDS NYFRNKYRVP FVPIVGVNNH FQLMMLGCAL  300
IGEETTSTFV WLMRTWLRSV GGQTPKLVIT DEGRLLEEAI TEVFPDTRHC LCLWNVLRKI  360
PENLDHIVNM SENFMTKFNK CIFRSWTKEE FEKKWWKIVD KFELREDEWL QSLYVNREKW  420
VPAYMNNTFL AGMCTTERSK CISSLFDKYL HKETSCKEFL DQYKVFLHDR SEEEAKSDFQ  480
AHHDLLALKS PSPFEKQMST VYTHAIFKKF QAEVLGIVSC SLQKKYEDEA IVTYRVDDFE  540
EQQNFIVAWN EVDLCICCLC HSFEYRGFLC RHAMIVLQMC GVSNIPSHYI LRRWTNEAKI  600
RQSNCEISSR FHYRVQRFND LCKRAINLGE EGSFSQETFN IVIYALQEAM ENCVGVNASV  660
KCVLEPNTLA NQGFLSTEEE NQTNIFAKAS KNKKIHKNLK GQLGFRAPTM HGCFNIQDSL  720
QDMVCVYLIR CNHSYYLCLM HILPNWLLSF YLLQEQSASS RKLHNIVSKR WHDKHLPQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028082808.1	0.0	protein FAR1-RELATED SEQUENCE 2-like isoform X2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2R6QCE9	0.0	A0A2R6QCE9_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_03s0017g01830.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]