PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn317511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 40136.3 Da PI: 8.2128 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 1.9e-51 | 40 | 164 | 6 | 129 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 rF Ptdeelv++yL+kkv++++++l +vik vd+y++ePwdL++ k+ a e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s k++l+g Achn317511 40 RFYPTDEELVDYYLRKKVASRRIDL-DVIKVVDLYNIEPWDLQElcKIGAeEHNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKSIYS-KRSLIG 136 9************************.99**************954555542556**************************************.8899** PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktLvfykgrap+g+k+dW+mheyrle Achn317511 137 MRKTLVFYKGRAPNGHKSDWIMHEYRLE 164 **************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.039 | 35 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 40 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.89E-57 | 40 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MVHNRLAPNE LSNWVGVMIK GYLKPHHQPS ITESKVSFGR FYPTDEELVD YYLRKKVASR 60 RIDLDVIKVV DLYNIEPWDL QELCKIGAEE HNEWYFFSHK DKKYPTGTRT NRATKAGFWK 120 ATGRDKSIYS KRSLIGMRKT LVFYKGRAPN GHKSDWIMHE YRLETNENGS PQVQEGWVVC 180 KVFKKRMPTM RKMGEHESPC WYDHDQVSFV PDFDSPCQIS QPYNTSHHQN YSFKKEIELH 240 YNIMPNDPFG LKLPQLESPK VAQNGNALQT STLTEEQQNL NQNNHQNINL VYSNNEQAVD 300 QLTDWRVLDK FVASQLSHED SSGRQGIGSG YASITIPMCP IDMWK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-44 | 40 | 186 | 20 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028069414.1 | 1e-162 | NAC domain-containing protein 7-like | ||||
Refseq | XP_028069415.1 | 1e-162 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-119 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A2R6QNK0 | 0.0 | A0A2R6QNK0_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_02s0154g00020.t01 | 1e-154 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-118 | NAC 007 |
Publications ? help Back to Top | |||
---|---|---|---|
|