PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn314731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 300aa    MW: 34040.8 Da    PI: 9.6965
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn314731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1781.8e-24148236189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 +fYn Y++ + Fs+r+ +s+ksk++g  + r+fvCsk+g+r ++k+     +r+r+etr++C+a++ +++++ ++kw+v  +e++HnH+l
  Achn314731 148 EFYNGYGRVMEFSIRICYSTKSKKDGVLIGRKFVCSKQGTRGKDKRY-LVVERPRKETRIKCDANMSISLNReTSKWVVVGFEEKHNHSL 236
                 6*******************************************999.88899******************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-20148236IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFVTKTKRDG YPLEQSKLSS IASNLCAKEG KWYTSKRKSS CKLDENILLK RQILFINGEQ  60
NRSFLRFRAN REEDDRKSRS DLLRDYHPRR SSSLSLSSSE TTNLAGVPLR SLSLSFLDVM  120
NVKENEHLIE NYTPCLQKEF ESEEAAYEFY NGYGRVMEFS IRICYSTKSK KDGVLIGRKF  180
VCSKQGTRGK DKRYLVVERP RKETRIKCDA NMSISLNRET SKWVVVGFEE KHNHSLHLPE  240
CAHMMKSQRT ICEAQAINVD IAADSGLSLK ASHDFLSAQA GGEGVLRLHT GGPKKLPEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051873.12e-63protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-16FAR1-related sequence 5