PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313661
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 422aa    MW: 46741.6 Da    PI: 7.2234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313661genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12247292454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Achn313661 247 NHVEAERHRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 292
                 799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-4428175IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.27E-17242306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.59243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-13246297No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16247306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9247292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MKFKEKIVKE NNPLTAFDGH DGHGSQPDWW AYAIFWGSSN QDDSGRLLLS WEDGHFQGAK  60
NTAPKQQHAT KHHHAALAGD ADVTDAAEWF YVMSLTRSFS TRDGIPGKAF SSGSLVWLFG  120
SNQLQFYNCE RAKEAQFHGI LTLVCVPTPI GVLELGSCDV IKENWGLVQQ VRSLFGSDSD  180
VIIPKIPKQP DSSNNISFAD FGLVTGLQEE GTTKNVESEY SKLENQQWKT PKKRGRKPGA  240
GREMVVNHVE AERHRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN ELKSKVELLE  300
SQVHERQCNK KVKLELGGAT DNQSTTTSVN QTRPNNNSFG VIQPPEVEVK IVGPDAMIRV  360
QSENGNYPAA RLMDALRDLE SPVHHASMSS VNDLMLQDVV IRAPEGLTSD GLKAALLRRL  420
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-26241318280Transcription factor MYC2
5gnj_B3e-26241318280Transcription factor MYC2
5gnj_E3e-26241318280Transcription factor MYC2
5gnj_F3e-26241318280Transcription factor MYC2
5gnj_G3e-26241318280Transcription factor MYC2
5gnj_I3e-26241318280Transcription factor MYC2
5gnj_M3e-26241318280Transcription factor MYC2
5gnj_N3e-26241318280Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880894.11e-170transcription factor MYC2-like
TrEMBLA0A2R6QP130.0A0A2R6QP13_ACTCH; Transcription factor bHLH14 like
STRINGEOX956141e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-82bHLH family protein