PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 434aa    MW: 47203.6 Da    PI: 4.2979
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.15.6e-2836125276
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............ke 76 
                   Fl k+y++++d+++++++sws ++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+Y+  +++++++++++               ++
    Achn313391  36 FLVKTYDMVDDPSTDKVVSWSPTNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYELVRLRQQQQTTDNqlqamvqrlqgmeqrQQ 125
                   9********************999********************************************9988844444443333332213 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-2929105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-2531103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-3332123IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-2436129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-163659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-167486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-168799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDAVNGGNDT TGNGGATPAP VPVPVPMPNA NAPPPFLVKT YDMVDDPSTD KVVSWSPTNN  60
SFVVWDPPEF ARDLLPKYFK HNNFSSFVRQ LNTYELVRLR QQQQTTDNQL QAMVQRLQGM  120
EQRQQQMMSF LAKAVNSPGF LAQFVNQQNE SNKRITEGNK KRRLKQDGIS DDHSVGHAGG  180
QIVKYQPMMN EAAKAMLREI IKLDASSWLE NNNNSDAFLI SNVSSPNSLD SGSSSTRTSG  240
VTLQEVPPSS GHSYLPATAG ISGHGPSAAP SDIHSSPLAA NSEMVTAIPF SSVNPMVGEH  300
EMPPVALPLT DLVMPELSPL QGMVPESNVG MESGAFGASG KMPFETDDFS SELEWDSSLL  360
EDEIQKLPEI GDPFWEQFLS SPQPVETEEM DSTLEVPIEG SEAKSLENGW NKAQHLEQLT  420
EQMGLLSSDT KQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-20281041897Heat shock factor protein 1
5d5v_B2e-20281041897Heat shock factor protein 1
5d5v_D2e-20281041897Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158165NKKRRLKQ
2159164KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072434.11e-158heat shock factor protein HSF8-like
SwissprotP411531e-103HSF8_SOLPE; Heat shock factor protein HSF8
TrEMBLA0A2R6PMI70.0A0A2R6PMI7_ACTCH; Heat shock factor protein
STRINGOMERI03G37790.11e-123(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.19e-32heat shock factor 1
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]