PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn313391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 434aa MW: 47203.6 Da PI: 4.2979 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 89.1 | 5.6e-28 | 36 | 125 | 2 | 76 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............ke 76 Fl k+y++++d+++++++sws ++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+Y+ +++++++++++ ++ Achn313391 36 FLVKTYDMVDDPSTDKVVSWSPTNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYELVRLRQQQQTTDNqlqamvqrlqgmeqrQQ 125 9********************999********************************************9988844444443333332213 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-29 | 29 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-25 | 31 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-33 | 32 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.1E-24 | 36 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-16 | 36 | 59 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-16 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-16 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MDAVNGGNDT TGNGGATPAP VPVPVPMPNA NAPPPFLVKT YDMVDDPSTD KVVSWSPTNN 60 SFVVWDPPEF ARDLLPKYFK HNNFSSFVRQ LNTYELVRLR QQQQTTDNQL QAMVQRLQGM 120 EQRQQQMMSF LAKAVNSPGF LAQFVNQQNE SNKRITEGNK KRRLKQDGIS DDHSVGHAGG 180 QIVKYQPMMN EAAKAMLREI IKLDASSWLE NNNNSDAFLI SNVSSPNSLD SGSSSTRTSG 240 VTLQEVPPSS GHSYLPATAG ISGHGPSAAP SDIHSSPLAA NSEMVTAIPF SSVNPMVGEH 300 EMPPVALPLT DLVMPELSPL QGMVPESNVG MESGAFGASG KMPFETDDFS SELEWDSSLL 360 EDEIQKLPEI GDPFWEQFLS SPQPVETEEM DSTLEVPIEG SEAKSLENGW NKAQHLEQLT 420 EQMGLLSSDT KQV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-20 | 28 | 104 | 18 | 97 | Heat shock factor protein 1 |
5d5v_B | 2e-20 | 28 | 104 | 18 | 97 | Heat shock factor protein 1 |
5d5v_D | 2e-20 | 28 | 104 | 18 | 97 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 158 | 165 | NKKRRLKQ |
2 | 159 | 164 | KKRRLK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028072434.1 | 1e-158 | heat shock factor protein HSF8-like | ||||
Swissprot | P41153 | 1e-103 | HSF8_SOLPE; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A2R6PMI7 | 0.0 | A0A2R6PMI7_ACTCH; Heat shock factor protein | ||||
STRING | OMERI03G37790.1 | 1e-123 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6413 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17750.1 | 9e-32 | heat shock factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|