PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 468aa    MW: 52238.2 Da    PI: 9.8799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12e-15261312155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Achn313111 261 QRMTHIAVERNRRKQMNEHLAVLRSLIPES---YAQRGDQASIVGGAIQYVKELE 312
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.8E-15259314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-12259314No hitNo description
SuperFamilySSF474591.83E-16260331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.253260311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12261312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-9266317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MPILVVLLEF GRVGRAYRYP TSPPNEIHDS TLPIAIDRRF VSNLTGSSMF EIFALSTALP  60
ALILLRHCFC FNDTNTRKIS LKKNDDMIVG FMSWKAYMAT IALDFLIIVL PMLLFLTDYL  120
RSMLYGVRKL RNALQSTSPL IILGIARLVS TAGVDYQVLA ILMLSDYIPG HKISVLEEAF  180
NRNLLASFLL VKIHLFVLLF IQSGLKPPEI GGASNSSSSM MKPCLLVGSK TVDRKKSVVQ  240
VRKKRRRRPK VCKNKEEAEA QRMTHIAVER NRRKQMNEHL AVLRSLIPES YAQRGDQASI  300
VGGAIQYVKE LEHLFHSREA QKLLLLQEGR APPNTTTTIA ASAAEFLTAP SVQFFGYPQW  360
RCCQTSDKYT SKSKADGTDI EVTLIETHAN LRILSRKSPR QLSKMVAGFQ TLNLSILHLH  420
VTTLDPLVLY SISAKVEEGC RLTSADDIAG AVHHMLIAII EEEATLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233247RKKSVVQVRKKRRRR
2233248RKKSVVQVRKKRRRRP
3241247RKKRRRR
4242247KKRRRR
5261272RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923169.11e-114transcription factor bHLH71-like
TrEMBLA0A2R6PCZ41e-107A0A2R6PCZ4_ACTCH; Transcription factor bHLH71 like
STRINGVIT_02s0012g01450.t011e-106(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-66bHLH family protein