PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn312121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 282aa    MW: 31448.6 Da    PI: 9.7543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn312121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.61.9e-1430120186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +L+ea   +  +l+rg+l++++W+ev++++     +  + +r+ +qCk++++ l+k+yk +k++ ++ + + +s++p+f +l+
  Achn312121  30 CWSEDATGTLVEAWGGRYVELNRGNLRQKDWQEVADAVnachgHLWKARRTDIQCKNRIDTLKKKYKIEKARVSECNGRYTSQWPFFARLD 120
                 7*************************************96655555679*************************9999999*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2428122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGDSDGGFSD PPAPATATHT PSSVPVREDC WSEDATGTLV EAWGGRYVEL NRGNLRQKDW  60
QEVADAVNAC HGHLWKARRT DIQCKNRIDT LKKKYKIEKA RVSECNGRYT SQWPFFARLD  120
SLIGSLYKPS PPLTASHRKT PLTLPPSPSA VPVGPRSKRP AAVDSSFFRR NFAVVAAAAA  180
AAEERSSAGD GERSGPDWFG KLAEAIERLG EIYERVEVAK QIQMIELEKQ RMKFAKDLEI  240
QRMKLFMDSQ IQLEKIKRAK RSSESGESFH RSFSTVCSKF Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065493.11e-116trihelix transcription factor ASIL2
TrEMBLA0A2R6QBY81e-178A0A2R6QBY8_ACTCH; Trihelix transcription factor
STRINGVIT_12s0028g02150.t011e-101(Vitis vinifera)
STRINGXP_009760894.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-67sequence-specific DNA binding transcription factors