PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn312091

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 164aa MW: 18580.7 Da PI: 6.8583

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn312091	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.2	1.6e-39	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrr+C++dCvlapyfpa++p++fa+vh+++Gasnv+k+l++lp e r+da++++++eA r++dPvyG++++i+klqqq+ q++ e+a++++ Achn312091 6 RCAACKSLRRRCSQDCVLAPYFPANNPQRFACVHRIYGASNVTKILEKLPVESRSDAADCMTFEASSRIQDPVYGSTQTIFKLQQQIVQTQYEIAKVQA 104 6***********************************************************************************************998 PP DUF260 100 e 100 e Achn312091 105 E 105 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.48	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-38	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSNSTRCAAC KSLRRRCSQD CVLAPYFPAN NPQRFACVHR IYGASNVTKI LEKLPVESRS 60 DAADCMTFEA SSRIQDPVYG STQTIFKLQQ QIVQTQYEIA KVQAELAMHN AQQQMHQIQQ 120 QQDHQNQNHL LGQSSLMNVN SAASEQEEEF HYLDQQQLGG FYH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-32	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-32	7	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051254.1	1e-64	LOB domain-containing protein 23-like
Swissprot	P59468	1e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2R6QBX8	1e-118	A0A2R6QBX8_ACTCH; LOB domain-containing protein
STRING	Aquca_018_00023.1	7e-53	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	4e-45	LOB domain-containing protein 23