PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn312091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18580.7 Da PI: 6.8583 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.2 | 1.6e-39 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrr+C++dCvlapyfpa++p++fa+vh+++Gasnv+k+l++lp e r+da++++++eA r++dPvyG++++i+klqqq+ q++ e+a++++ Achn312091 6 RCAACKSLRRRCSQDCVLAPYFPANNPQRFACVHRIYGASNVTKILEKLPVESRSDAADCMTFEASSRIQDPVYGSTQTIFKLQQQIVQTQYEIAKVQA 104 6***********************************************************************************************998 PP DUF260 100 e 100 e Achn312091 105 E 105 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.48 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-38 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSNSTRCAAC KSLRRRCSQD CVLAPYFPAN NPQRFACVHR IYGASNVTKI LEKLPVESRS 60 DAADCMTFEA SSRIQDPVYG STQTIFKLQQ QIVQTQYEIA KVQAELAMHN AQQQMHQIQQ 120 QQDHQNQNHL LGQSSLMNVN SAASEQEEEF HYLDQQQLGG FYH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-32 | 7 | 106 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-32 | 7 | 106 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051254.1 | 1e-64 | LOB domain-containing protein 23-like | ||||
Swissprot | P59468 | 1e-43 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2R6QBX8 | 1e-118 | A0A2R6QBX8_ACTCH; LOB domain-containing protein | ||||
STRING | Aquca_018_00023.1 | 7e-53 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 4e-45 | LOB domain-containing protein 23 |