PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn310791

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 306aa MW: 34238.8 Da PI: 6.7475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn310791	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32	3.6e-10	3	37	96	128
NAM 96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Achn310791 3 NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 37 67899*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.59	1	56	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-12	3	56	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MVNGKQKGCK KILVLYTNFG KNRKPEKTNW VMHQYHLGQH EEEREGELVV SKIFYQTQPR 60 QCNWAERGGT VATGEGSGEA SSRRESAGSG SCSSKEIVIS SQRDEMAVVG ATISSYGAME 120 MQQLKGDHFS FTPFRKSFDE GGVGEASTLR EAQLQVTCEA RDIHEQHMTH HVTTPHEHHQ 180 HQHQHQHHQI GGATTAFHVS RPSHPISTII SPPPPSLHHT SIILDEASFH VPRILLPNEN 240 FQQQQQQQQQ HHKLGGRSGS GLEELIMGCT STDIKEESSI TNPQEADWLK YSTFWPDPDN 300 QDHHG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010656245.1	1e-142	PREDICTED: NAC domain-containing protein 8 isoform X2
Refseq	XP_010656246.1	1e-142	PREDICTED: NAC domain-containing protein 8 isoform X3
Swissprot	Q9M0F8	6e-84	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2R6Q4Y6	0.0	A0A2R6Q4Y6_ACTCH; NAC domain-containing protein
STRING	VIT_11s0016g02880.t01	1e-141	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	2e-41	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]