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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn305931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 60740.7 Da PI: 4.8944 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 452 | 3.8e-138 | 172 | 542 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+e+L++cA+av+++dl +++l+++l++++s +gdp+qRl ay+ e+L arla+s+s +yk+l+++e + +e l+++++++ev+P++kf+++ aN Achn305931 172 LKEVLIACAKAVEDNDLLTVEWLMSELRQMVSVSGDPIQRLGAYMSEGLVARLASSGSAIYKTLKCKEPA---GAELLSYMHMLYEVCPYFKFGYMSAN 267 5789*****************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI ea++ e+r+HiiDf+isqG QW++L+qaLa+Rp+gpp++ iTg+++++s + l+ +g+rL++fAe+++vpfef++ v + ++le+++L v Achn305931 268 GAIAEAMKDEDRIHIIDFQISQGSQWVTLIQALAARPGGPPRICITGIDDSTSAyaRGGGLHIVGQRLTRFAESCKVPFEFHA-VPISASMLEVQDLGV 365 **************************************************998899999************************.68899********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +p+E +aVn++l lh+++desvs+e++rd++L++vkslsPk+v++veqe+++n+++Fl rfle+l+yy a+f+s++++lpre++eri+vE+++l+reiv Achn305931 366 QPEEPVAVNFALVLHHIPDESVSIENHRDRLLRMVKSLSPKIVTLVEQESNTNTTPFLPRFLETLNYYFAIFESIDVTLPREHKERINVEQHCLAREIV 464 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n++acegaer+ rhe lekWr+r+ +aGF+p+pl++ +++++k+ll+ ++ d y++ee++g+l+lgW++++Lv+ +aW+ Achn305931 465 NIIACEGAERVDRHELLEKWRSRFYMAGFTPYPLNSVVNATIKTLLESYS-DNYTLEERDGTLYLGWMNQNLVASCAWK 542 **************************************************.55*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.294 | 146 | 523 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-135 | 172 | 542 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MQESQKQGNS GGSRRLYYQP AQELKSYTWP PSQILDHNLC SDNGSQVTHF SSDQLCNFES 60 STAASGYPLQ DSPSAFSFSA HGSPLSQPDS QSYASDTLHS PDNTYTSTVR GICLTDDNEM 120 RYKLRELETV MLGPDPNMLE ACDISILGGP NQIPSESENW KQMTEVIRRR DLKEVLIACA 180 KAVEDNDLLT VEWLMSELRQ MVSVSGDPIQ RLGAYMSEGL VARLASSGSA IYKTLKCKEP 240 AGAELLSYMH MLYEVCPYFK FGYMSANGAI AEAMKDEDRI HIIDFQISQG SQWVTLIQAL 300 AARPGGPPRI CITGIDDSTS AYARGGGLHI VGQRLTRFAE SCKVPFEFHA VPISASMLEV 360 QDLGVQPEEP VAVNFALVLH HIPDESVSIE NHRDRLLRMV KSLSPKIVTL VEQESNTNTT 420 PFLPRFLETL NYYFAIFESI DVTLPREHKE RINVEQHCLA REIVNIIACE GAERVDRHEL 480 LEKWRSRFYM AGFTPYPLNS VVNATIKTLL ESYSDNYTLE ERDGTLYLGW MNQNLVASCA 540 WK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-63 | 179 | 541 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-63 | 179 | 541 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-63 | 179 | 541 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028103272.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028103273.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028103274.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2R6PRB7 | 0.0 | A0A2R6PRB7_ACTCH; Scarecrow-like transcription factor | ||||
STRING | VIT_19s0090g01740.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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