PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn305591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 314aa    MW: 35393.1 Da    PI: 8.5404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn305591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-06152171120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp+C+k+F+r  n++ H+
  Achn305591 152 FVCPICSKTFNRYNNMQMHM 171
                 89*****************9 PP
2zf-C2H215.93.7e-05236258123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cgk F  k + ++H +++
  Achn305591 236 FTCRKCGKNFAVKGDWRTHEKNC 258
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-6147175No hitNo description
SMARTSM003550.034152174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-6152171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512152179IPR007087Zinc finger, C2H2
PfamPF139121.2E-4152171IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM00355190199231IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.9E-6222256No hitNo description
Gene3DG3DSA:3.30.160.602.9E-5232256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555236256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSTVRSYHVQ NMDFCFQAPT FIEWLKPSPS PSSSLSSSSS LTQQEDSIVG ETIQCLPLLS  60
RLIETKPVKE EDDGDEKENG FGIKGEKIEK VTVALHIGLP NTGESDSEAK SFKRKREGGE  120
SKEKGFGGHT FNAESRFWIP TPVQILVGPM QFVCPICSKT FNRYNNMQMH MWGHGSEYRK  180
GPESLRGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGTKPFTCRK  240
CGKNFAVKGD WRTHEKNCGK LWFCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFEDEK  300
ECVTGSEDEE MAY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983975.11e-170PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-120ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2R6Q7850.0A0A2R6Q785_ACTCH; Zinc finger protein
STRINGEOY334691e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-115WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]