PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn305591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 314aa MW: 35393.1 Da PI: 8.5404 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.8e-06 | 152 | 171 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+k+F+r n++ H+ Achn305591 152 FVCPICSKTFNRYNNMQMHM 171 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.7e-05 | 236 | 258 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F k + ++H +++ Achn305591 236 FTCRKCGKNFAVKGDWRTHEKNC 258 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-6 | 147 | 175 | No hit | No description |
SMART | SM00355 | 0.034 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 152 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.512 | 152 | 179 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-4 | 152 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 199 | 231 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.9E-6 | 222 | 256 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 232 | 256 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 55 | 236 | 256 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.642 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSTVRSYHVQ NMDFCFQAPT FIEWLKPSPS PSSSLSSSSS LTQQEDSIVG ETIQCLPLLS 60 RLIETKPVKE EDDGDEKENG FGIKGEKIEK VTVALHIGLP NTGESDSEAK SFKRKREGGE 120 SKEKGFGGHT FNAESRFWIP TPVQILVGPM QFVCPICSKT FNRYNNMQMH MWGHGSEYRK 180 GPESLRGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGTKPFTCRK 240 CGKNFAVKGD WRTHEKNCGK LWFCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFEDEK 300 ECVTGSEDEE MAY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983975.1 | 1e-170 | PREDICTED: zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 1e-120 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A2R6Q785 | 0.0 | A0A2R6Q785_ACTCH; Zinc finger protein | ||||
STRING | EOY33469 | 1e-169 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-115 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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