PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn304771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 160aa    MW: 18064.2 Da    PI: 7.0981
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn304771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.23e-10831123
        GATA  1 CsnCgttkTplWRrgpdgnkt.LC 23
                C+ C+ttkTplWR gpdg+k+ +C
  Achn304771  8 CADCKTTKTPLWRFGPDGPKEsVC 31
                *******************98788 PP
2GATA32.21.5e-104162123
        GATA  1 CsnCgttkTplWRrgpdgnktLC 23
                C+ C+ttkTplWR gpdg+k +C
  Achn304771 41 CADCKTTKTPLWRVGPDGPK-VC 62
                ********************.** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.328225IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-5331No hitNo description
Gene3DG3DSA:3.30.50.101.5E-7631IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.4E-7827IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.8973562IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-53662No hitNo description
Gene3DG3DSA:3.30.50.102.3E-73961IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.9E-94162IPR000679Zinc finger, GATA-type
PfamPF004320.176175IPR001330PFTB repeat
SuperFamilySSF482392.62E-2461154IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
Gene3DG3DSA:1.50.10.205.5E-2862154IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
PfamPF004320.358094IPR001330PFTB repeat
PfamPF004321.3E-699133IPR001330PFTB repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MNEMNKCCAD CKTTKTPLWR FGPDGPKESV CEEMNEMNKC CADCKTTKTP LWRVGPDGPK  60
VCYSWWVLSS LIMIDRVHWI DKAKLVKFIL DCQMLLLNVK KCQDKEKGGI SDMPDDAVDV  120
FHTYFGVAGL SLLEYPGLKF IDPAYALPVD VVNRVFFGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6o60_B6e-2659155238324Geranylgeranyl transferase type-2 subunit beta
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2 (PubMed:26589801). Involved in the geranylgeranylation of RABA2A (PubMed:20180921). In vitro, can prenylate PGGTI targets with the C-terminal sequence Cys-aliphatic-aliphatic-X (CaaX) with leucine in the terminal position. Substrates with the C-terminal sequence -CSIL such as ARAC11/ROP1 or GG2/AGG2 are prenylated independently of REP and when the beta subunit is associated with the alpha subunit RGTA1 (PubMed:26589801). {ECO:0000269|PubMed:20180921, ECO:0000269|PubMed:26589801}.; FUNCTION: Required for male fertility and root tip growth. {ECO:0000269|PubMed:25316062}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122959.12e-51geranylgeranyl transferase type-2 subunit beta 1-like isoform X2
RefseqXP_027122960.12e-51geranylgeranyl transferase type-2 subunit beta 1-like isoform X2
SwissprotQ84J754e-47PGTB1_ARATH; Geranylgeranyl transferase type-2 subunit beta 1
TrEMBLA0A2R6RFA33e-50A0A2R6RFA3_ACTCH; Geranylgeranyl transferase type-2 subunit beta
STRINGSolyc03g118570.2.11e-48(Solanum lycopersicum)
STRINGXP_009591897.11e-48(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.15e-08GATA transcription factor 23
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Hála M,Soukupová H,Synek L,Zárský V
    Arabidopsis RAB geranylgeranyl transferase beta-subunit mutant is constitutively photomorphogenic, and has shoot growth and gravitropic defects.
    Plant J., 2010. 62(4): p. 615-27
    [PMID:20180921]
  3. Gutkowska M, et al.
    Rab geranylgeranyl transferase β subunit is essential for male fertility and tip growth in Arabidopsis.
    J. Exp. Bot., 2015. 66(1): p. 213-24
    [PMID:25316062]
  4. Shi W,Zeng Q,Kunkel BN,Running MP
    Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro.
    J. Biol. Chem., 2016. 291(3): p. 1398-410
    [PMID:26589801]
  5. van Bokhoven H,Rawson RB,Merkx GF,Cremers FP,Seabra MC
    cDNA cloning and chromosomal localization of the genes encoding the alpha- and beta-subunits of human Rab geranylgeranyl transferase: the 3' end of the alpha-subunit gene overlaps with the transglutaminase 1 gene promoter.
    Genomics, 1996. 38(2): p. 133-40
    [PMID:8954794]