PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn303311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 27847.8 Da PI: 8.9519 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 74 | 170 | 4 | 100 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqq++++l+ael+++++e Achn303311 74 ACKLLRRRCAEECPFSPYFSPHEPHKFSAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQEVQSLQAELNAVRAE 170 9********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.792 | 70 | 171 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-39 | 73 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MRYLQSKLVS MHMLQQYKLQ IGYITHQKTK VSNDCSEKKE GERLGESWSS RVCFDYTLFL 60 DQFVRLQSRG KNRACKLLRR RCAEECPFSP YFSPHEPHKF SAVHKVFGAS NVSKMLMEVP 120 ESQRADAANS LVYEANVRLR DPVYGCMGAI SALQQEVQSL QAELNAVRAE ILRLKYRETA 180 NNIIASTHAA LATPHAVSVA VLQPPSAPPP PLPPSVVVSS SEGSSNLYNP MPASTMGYNS 240 IPSDGVPYFH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 74 | 173 | 14 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 74 | 173 | 14 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092113.1 | 6e-77 | LOB domain-containing protein 15-like | ||||
TrEMBL | A0A2R6P6F0 | 1e-100 | A0A2R6P6F0_ACTCH; LOB domain-containing protein | ||||
STRING | VIT_06s0004g07790.t01 | 2e-74 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-63 | LOB domain-containing protein 13 |