PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn302211

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 599aa MW: 67776 Da PI: 4.9223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn302211	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	415	446	19	55
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +f L++++P+ + ++Ka+iL ++eY+k+L+ Achn302211 415 KFLVLKSMVPSiN------MVDKASILGDTIEYLKELE 446 7888999999977......69**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.7E-27	41	171	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	6.32E-5	409	450	No hit	No description
SuperFamily	SSF47459	1.44E-7	414	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-8	414	465	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MSIVDMLVAP CMDKAMERER ILLFYCNLFI HLRKIVVVML RVLEWADGYY NGDIKTRKTV 60 QAMELKADKM GLQRSEQLRE LYECLLEGET DQQATIPTAA LSPDDLTDAE WYYLVCMSFV 120 FNPGQGLPGR ALANGQPIWL CNAHSADSKV FSRSLLAKVS EDPSLIQHIK TSLLEFSKPV 180 CSEKSSSAPH NKDDDADFVY VKVDHEMVNT MEIENLYPPT EDIGFDHDGL KELDGNIQDD 240 FTMGSPDDCS YGCEHNHQTD DSFRVNGGAS QVQSWHFMDD DFSNCIQDSI NSSDCISQAV 300 VNQEKPIFSP PKGDNTSLKE RKECNNAKFS SLDLGHDDDL HYKRTLSAVL MRNSHRLLDH 360 LCFRSCEYKS SFVSWKKGEI ANTHGPKLQQ KMLKKILFDV TLMHDFPDKR MEDEKFLVLK 420 SMVPSINMVD KASILGDTIE YLKELEGRVE ELESCIDLAE HEAKATRKYP DVIEKTSENN 480 ENMRIDNKKP WINKRKASDI DETDPQLSSV VPKDEPLKDM KVKIKEQEVL IEMRCPSREY 540 LLLDIIDALN NLNLDAHSVQ SSTVDGILTV TLQSKFRGAA IASARMIKQA LSTIAGKC*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MSIVDMLVAP CMDKAMERER ILLFYCNLFI HLRKIVVVML RVLEWADGYY NGDIKTRKTV  60
QAMELKADKM GLQRSEQLRE LYECLLEGET DQQATIPTAA LSPDDLTDAE WYYLVCMSFV  120
FNPGQGLPGR ALANGQPIWL CNAHSADSKV FSRSLLAKVS EDPSLIQHIK TSLLEFSKPV  180
CSEKSSSAPH NKDDDADFVY VKVDHEMVNT MEIENLYPPT EDIGFDHDGL KELDGNIQDD  240
FTMGSPDDCS YGCEHNHQTD DSFRVNGGAS QVQSWHFMDD DFSNCIQDSI NSSDCISQAV  300
VNQEKPIFSP PKGDNTSLKE RKECNNAKFS SLDLGHDDDL HYKRTLSAVL MRNSHRLLDH  360
LCFRSCEYKS SFVSWKKGEI ANTHGPKLQQ KMLKKILFDV TLMHDFPDKR MEDEKFLVLK  420
SMVPSINMVD KASILGDTIE YLKELEGRVE ELESCIDLAE HEAKATRKYP DVIEKTSENN  480
ENMRIDNKKP WINKRKASDI DETDPQLSSV VPKDEPLKDM KVKIKEQEVL IEMRCPSREY  540
LLLDIIDALN NLNLDAHSVQ SSTVDGILTV TLQSKFRGAA IASARMIKQA LSTIAGKC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028094937.1	0.0	transcription factor EGL1-like
Refseq	XP_028094938.1	0.0	transcription factor EGL1-like
Refseq	XP_028094939.1	0.0	transcription factor EGL1-like
TrEMBL	A0A2R6R9T2	0.0	A0A2R6R9T2_ACTCH; Transcription factor GLABRA like
STRING	VIT_15s0046g02560.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4576	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-119	bHLH family protein