PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn301081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 35850 Da PI: 8.9621 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42.2 | 2.4e-13 | 81 | 120 | 52 | 91 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++e+ew+fFs+r +ky++g++++rat+sgyWkatgk+++ Achn301081 81 VQSESEWFFFSSRGRKYPNGSQSKRATESGYWKATGKERK 120 45678********************************886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.566 | 29 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-5 | 79 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-12 | 81 | 120 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MFSYDLKRIG VTRDWIKIQV FTVRTNLLLL LDLRRHSSIT RGVEESSILT SSSSKRCSIK 60 RKNTSFQSAS SAFRADAKSV VQSESEWFFF SSRGRKYPNG SQSKRATESG YWKATGKERK 120 DSMVICRLRK NAEFRLNDSP RQGSSSRRHE NTSNLASEDN SHNSHSVEHQ LGTGSDSDQR 180 ERDEFCQISS SHQGCDDEDC YADILKDDIV DLGQSLLPPT PSEKSEDERK SQDPVEAIPL 240 RALPFQGTAE RRIRLRKLKT EKYYAGLLDV DIFNKNPTEK SGIDFDRLVK GLEYHLQSEW 300 LFYLGGCVAT LQRK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 250 | 256 | RRIRLRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065019.1 | 8e-64 | NAC domain-containing protein 40-like | ||||
TrEMBL | A0A2R6PEM6 | 1e-139 | A0A2R6PEM6_ACTCH; NAC domain-containing protein | ||||
STRING | XP_009340876.1 | 1e-47 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22290.1 | 8e-29 | NAC domain containing protein 89 |