PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn299661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WOX | ||||||||
Protein Properties | Length: 184aa MW: 20891.9 Da PI: 10.3954 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.5e-21 | 88 | 147 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Achn299661 88 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITLQLekygNIEGKNVFYWFQNHKARERQ 147 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.6 | 5.5e-38 | 88 | 149 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +Le+yG+ie+kNVfyWFQN+kaRerqkq Achn299661 88 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITLQLEKYGNIEGKNVFYWFQNHKARERQKQ 149 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.203 | 83 | 148 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-11 | 85 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-5 | 85 | 152 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.9E-19 | 88 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.44E-5 | 88 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 89 | 147 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGSSMKVHQF ARGLWDHEPP TPSLSLGCCK TTSTLRPLAP KLPNTDTLTP NFDLKSFIRP 60 ESGPIKLKLI SDHKRDKAQV QETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEQIT 120 LQLEKYGNIE GKNVFYWFQN HKARERQKQK QKHNSLGLND SPRSLTGITF TTITLETRVR 180 LTE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017177.1 | 1e-80 | PREDICTED: WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 9e-63 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A2R6Q057 | 1e-120 | A0A2R6Q057_ACTCH; WUSCHEL-related homeobox like | ||||
STRING | EOY14402 | 5e-80 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-62 | WUSCHEL related homeobox 4 |