PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn299661

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WOX

Protein Properties

Length: 184aa MW: 20891.9 Da PI: 10.3954

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn299661	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	88	147	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Achn299661 88 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITLQLekygNIEGKNVFYWFQNHKARERQ 147 7***************99************************************97 PP
2	Wus_type_Homeobox	117.6	5.5e-38	88	149	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +Le+yG+ie+kNVfyWFQN+kaRerqkq Achn299661 88 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITLQLEKYGNIEGKNVFYWFQNHKARERQKQ 149 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.203	83	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-11	85	152	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-5	85	152	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-19	88	147	IPR001356	Homeobox domain
CDD	cd00086	4.44E-5	88	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-7	89	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGSSMKVHQF ARGLWDHEPP TPSLSLGCCK TTSTLRPLAP KLPNTDTLTP NFDLKSFIRP 60 ESGPIKLKLI SDHKRDKAQV QETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEQIT 120 LQLEKYGNIE GKNVFYWFQN HKARERQKQK QKHNSLGLND SPRSLTGITF TTITLETRVR 180 LTE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017177.1	1e-80	PREDICTED: WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	9e-63	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2R6Q057	1e-120	A0A2R6Q057_ACTCH; WUSCHEL-related homeobox like
STRING	EOY14402	5e-80	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-62	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]