PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 229aa    MW: 24731.6 Da    PI: 10.0256
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66e-25149193145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Achn299261 149 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 193
                 79****************************************986 PP
2QLQ668.9e-2379115137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 s+FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k
  Achn299261  79 SPFTPSQWMELEHQALIYKYITANVPVPSNLLTPIRK 115
                 89*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-1379115IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.92780115IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-1680114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847149193IPR014977WRC domain
PfamPF088793.1E-21150192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSFGDESERE RENPETKHKW YGSGFLKEEG PEPKVAKTDV LSANSKAMLR PNSSFLSHGH  60
GYGGLNASSM HGVLSGVRSP FTPSQWMELE HQALIYKYIT ANVPVPSNLL TPIRKALDSA  120
GLSGFSVGPL RSSTLGWGAY HLGYSNNTDP EPGRCRRTDG KKWRCSRDAV VDQKYCERHM  180
NRGRHRSRKP VEGQNGHSVS GTATTTAKPS STSALVVPGG GASNSLGF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283504.21e-97PREDICTED: growth-regulating factor 1
SwissprotQ6AWY21e-59GRF7_ORYSJ; Growth-regulating factor 7
SwissprotQ6AWY34e-59GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A2R6Q0J51e-149A0A2R6Q0J5_ACTCH; Growth-regulating factor like
STRINGVIT_18s0001g08650.t014e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-58growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]